Ip - OmicsDI

Show results for

Unknown (11156)
Transcriptomics (5947)
Genomics (4834)
Proteomics (3056)
Other (120)
Methylation profiling (36)
Metabolomics (31)
Clinical (14)
Models (11)
Multiomics (1)

Organisms

Homo sapiens (2954)
Mus musculus (2098)
Drosophila melanogaster (1137)
Caenorhabditis elegans (848)
Saccharomyces cerevisiae (272)
Rattus norvegicus (238)
Arabidopsis thaliana (227)
Schizosaccharomyces pombe (71)
Sus scrofa (50)
Danio rerio (48)
Bos taurus (44)
Gallus gallus (38)
Zea mays (35)
Escherichia coli (32)
Escherichia coli str. K-12 substr. MG1655 (26)
Oryza sativa (26)
Macaca mulatta (18)
Oryza sativa Japonica Group (18)
Streptomyces venezuelae (16)
Streptococcus pneumoniae D39 (16)
Candida albicans (14)
Salmonella enterica subsp. enterica serovar Typhimurium (14)
Trypanosoma brucei (13)
Canis lupus familiaris (12)
Salmo salar (10)
Oncorhynchus mykiss (9)
Rattus rattus (6)
cellular organisms (6)
Rattus (5)
Plasmodium falciparum (4)

Organisms

Mus musculus (679)
Homo sapiens (672)
Saccharomyces cerevisiae (111)
Arabidopsis thaliana (76)
Drosophila melanogaster (67)
Rattus norvegicus (57)
Caenorhabditis elegans (54)
Oryza sativa (33)
Schizosaccharomyces pombe (17)
Yersinia pseudotuberculosis IP 32953 (8)
Zea mays (7)
Oryza sativa Japonica Group (7)
Populus tremula x Populus alba (6)
Xenopus laevis (5)
Danio rerio (5)
Gallus gallus (5)
Escherichia coli (5)
Yersinia wautersii (4)
Salmo salar (4)
Macaca fascicularis (4)
Candida albicans (4)
Bacillus subtilis subsp. subtilis str. 168 (4)
Halobacterium salinarum NRC-1 (3)
Geobacter sulfurreducens PCA (3)
Plasmodium falciparum (3)
Escherichia coli str. K-12 substr. MG1655 (3)
Gossypium hirsutum (3)
Mus (3)
unidentified (3)
Tetrahymena thermophila (3)

Repository

biostudies-arrayexpress (6806)
pride (2474)
ENA (2334)
geo (1763)
iProX (318)
MassIVE (152)
jPOST (86)
EGA (42)
MetaboLights (20)
BioModels (10)
NODE (10)
GNPS (8)
PanoramaPublic (5)
GPMDB (3)
MetabolomicsWorkbench (3)
Cell Collective (1)
EVA (1)

Tissue

Cell culture (779)
Epithelial cell (240)
Permanent cell line cell (142)
Brain (106)
Embryonic stem cell (86)
Plant cell (66)
Kidney (63)
Fibroblast (54)
Liver (53)
Leaf (51)
Whole body (48)
Blood (46)
Embryo (44)
Stem cell (40)
T cell (40)
HeLa cell (39)
Cell suspension culture (37)
Testis (34)
Hepatocyte (34)
Blood cell (34)
Lung (33)
B cell (32)
Pancreas (9)
Cell line (5)
Umbilical cord (2)
Cecum (1)
Macrophages (1)
Blood (1)
Prostate (1)
PBMC (1)

Disease

Breast cancer (56)
Normal (14)
Lung adenocarcinoma (9)
Chronic myeloid leukemia (7)
Obesity (5)
Osteosarcoma (5)
Pancreatic ductal adenocarcinoma (5)
Carcinoma (2)
Neuroendocrine tumor (1)
Testicular seminoma (1)
CLL (1)
Arrhythmias and right ventricular dysfunction (1)
GIP-dependent Cushing's syndrome (1)
HPV positive (1)
Osteosarcoma subtype fibroblastic (1)
High grade glioblastoma (1)
Cocaine addiction (1)
Extra-adrenal sympathetic paraganglioma (1)
Primary effusion lymphoma (PEL) (1)
DNA damage (1)
CVB3 infected (1)
Uninfected (1)
Fetal growth restriction (1)
Post-stasis (1)
Hypertension (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Schizophrenia (1)
Glioma (1)
Primary tumor (1)
Schistosoma japonicum infection (1)

Technology Type

Mass Spectrometry (2477)
Affinity purification coupled with mass spectrometry proteomics (964)
Shotgun proteomics (847)
Bottom-up proteomics (511)
Data-dependent acquisition (329)
Gel-based experiment (259)
Data-independent acquisition (120)
Top-down proteomics (52)
SWATH MS (47)
Chemical cross-linking coupled with mass spectrometry proteomics (38)
Affinity proteomics (32)
SRM/MRM (30)
Immunopeptidomics (19)
Mass spectrometry (18)
Proteogenomics (13)
All-ion fragmentation (11)
DiaPASEF (9)
MSE (4)
Illumina HiSeq 2000 (2)
ESI (2)
Glycoproteomics (2)
Mass spectrometry imaging (2)
RNA mass spectrometry (2)
HDMSE (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
Other (1)
SomaScan affinity proteomics (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2000 (95)
NextSeq 500 (71)
Illumina NovaSeq 6000 (59)
Illumina HiSeq 2500 (54)
Illumina HiSeq 4000 (31)
Illumina MiSeq (17)
Illumina Genome Analyzer IIx (12)
Illumina Genome Analyzer II (10)
Axon GenePix 4000B scanning hardware (8)
NextSeq 550 (8)
NextSeq 2000 (7)
Illumina HiSeq 3000 (7)
Illumina HiSeq 1500 (6)
GenePix 4000B [Axon Instruments] (5)
Vortex (5)
Axon- GenePix4000B (4)
Illumina NovaSeq X (4)
Illumina HiSeq 1000 (4)
Element AVITI (3)
AB SOLiD 4 System (3)
None (3)
HiSeq X Ten (3)
DELL PRECISION 7500 (2)
Axon GenePix4000B (2)
G2500A GeneArray scanner [Agilent Technologies] (2)
Ion Torrent Proton (2)
MinION (2)
BGISEQ-500 (2)
Using NEBNext Ultra II DNA Library (1)
KAPA RNA HyperPrep Kit (1)

Publication Date

2024 (1562)
2013 (1234)
2015 (985)
2010 (946)
2012 (795)
2011 (763)
2014 (762)
2025 (589)
2026 (536)
2023 (480)
2016 (456)
2022 (442)
2021 (349)
2008 (304)
2020 (263)
2009 (252)
2019 (220)
2018 (167)
2007 (125)
2017 (123)
2006 (61)
2005 (43)
2004 (18)
2003 (7)
2002 (4)

UNIPROT ID/AC

P42232 (1)
P42230 (1)
P11216 (1)

CHEBI ID

CHEBI:15891 (8)
CHEBI:30769 (8)
CHEBI:16704 (7)
CHEBI:16027 (7)
CHEBI:16708 (7)
CHEBI:17596 (6)
CHEBI:16335 (6)
CHEBI:15428 (6)
CHEBI:6650 (6)
CHEBI:16737 (6)
CHEBI:25017 (6)
CHEBI:17154 (6)
CHEBI:28044 (6)
CHEBI:29108 (5)
CHEBI:33508 (5)
CHEBI:48430 (5)
CHEBI:17126 (5)
CHEBI:17050 (5)
CHEBI:17568 (5)
CHEBI:27897 (5)
CHEBI:32816 (5)
CHEBI:16449 (5)
CHEBI:15741 (5)
CHEBI:22660 (5)
CHEBI:16919 (5)
CHEBI:28300 (5)
CHEBI:27266 (5)
CHEBI:16811 (5)
CHEBI:16595 (2)
CHEBI:38068 (1)

Metabolite Name

Alanine (4)
Taurine (4)
Adenosine diphosphate (3)
Trimethylamine N-oxide (3)
Palmitoyl sphingomyelin (d18:1/16:0) (3)
O-sulfo-L-tyrosine (3)
N-acetylleucine (3)
N-acetylglycine (3)
Indoleacetate (3)
Hippurate (3)
Carboxyethyl-GABA (3)
Beta-hydroxyisovalerate (3)
4-methyl-2-oxopentanoate (3)
3-hydroxylaurate (3)
3-hydroxy-3-methylglutarate (3)
1-stearoyl-2-arachidonoyl-GPI (18:0/20:4) (3)
1-palmitoyl-GPE (16:0) (3)
1-palmitoyl-GPC (16:0) (3)
1-palmitoyl-2-stearoyl-GPC (16:0/18:0) (3)
1-palmitoyl-2-oleoyl-GPC (16:0/18:1) (3)
1-linoleoyl-GPC (18:2) (3)
Sphingosine (3)
5-oxoproline (3)
Glycerol (3)
Spermidine (3)
Leucine (3)
Valine (3)
UDP-GlcNAc (3)
Tyrosine (3)
Threonine (3)

First Public Date

2014 (334)
2024 (273)
2025 (229)
2023 (181)
2021 (181)
2026 (179)
2019 (165)
2022 (155)
2020 (138)
2013 (134)
2017 (121)
2018 (101)
2015 (80)
2016 (62)
2012 (1)

Modelling Approach

Ordinary differential equation model (9)
Computational model (1)

Study status

Recruiting (7)
Active, not recruiting (2)
Terminated (2)
Completed (2)
Not provided (1)

Lab affiliation

Head of the Curie Institute Mass Spectrometry Platform (17)
EDyP (15)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
University of Edinburgh (10)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (10)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (9)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (9)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (8)
UMR 7367 CNRS-UL IMoPA Biopôle de l'Université de Lorraine Campus Brabois-Santé 9 avenue de la forêt de Haye 54505 Vandoeuvre-les-Nancy FRANCE (7)
Whitehead Institute for Biomedical Research and Massachusetts Institute of Technology (6)
TIGEM (6)
IGMM, CNRS, Université de Montpellier, Montpellier, France (5)
State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan,Hubei 430062, China (5)
IGMM, CNRS, Univ Montpellier, Montpellier, France (5)
UCSF (5)
Princeton University (5)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (5)
Department of Cell Biology, Harvard Medical School, Boston MA (5)
Systems Biology Ireland, University College Dublin (5)
Genome Regulation, Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland (4)
Whitehead Institute and MIT (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (4)
Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai, China. (4)
The Rockefeller University (4)
Director, Institute of Biochemistry II Goethe University Medical Faculty University Hospital Building 75 Theodor-Stern-Kai 7 60590 Frankfurt am Main Germany (4)
Department of Molecular Biology, Princeton University (4)
Department of Molecular Biology, Princeton University, USA (4)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (4)
Yale University (4)
Carnegie Mass Spectrometry Facility (4)

Keyword

Oxaliplatin (5)
Bevacizumab (3)
IP-001 (2)
Cytoreductive surgery (2)
Taxol (1)
Tasigna (1)
Peritoneal Carcinomatosis Index (PCI) (1)
Cytoreductive surgery (CRS) (1)
Necrosis (1)
Ki-67 (1)
SMART System (1)
Appendiceal mucinous neoplasm (1)
CRS/HIPEC (1)
Appendix cancer (1)
LAMN (1)
Intraperitoneal (IP) OXAliplatin (1)
Phase I/II dose escalation trial (1)
FOLFIRI Bevacizumab chemotherapy (1)
Peritoneal Metastasis (1)
Pseudomyxoma peritonei (1)
Mitomycins (1)
Mitomycin (1)
HIPEC (1)
Progression Free Survival (1)
Mitomycin C (1)
Anti-cancer drug or therapy (1)
Intratumoral injection (1)
Thermal ablation (1)
Phase lb/lla (1)
Tumor ablation (1)

IsPrivate

False (10)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (60)
fungi (7)
protozoa (5)

Modification

2x(15)N labeled L-lysine (12)
4x(15)N labeled L-arginine (10)
4-tetrahydrothiazine-3-carboxylic acid (4)
1x(15)N labeled L-leucine (1)
6x(2)H labeled dimethylated L-arginine (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (3244)
ChIP-seq (1171)
RNA-seq of coding RNA (673)
ChIP-chip by tiling array (509)
ChIP-chip by array (194)
Other (156)
Methylation profiling by array (155)
RNA-seq of non coding RNA (152)
Unknown experiment type (139)
Methylation profiling by high throughput sequencing (66)
Comparative genomic hybridization by array (62)
Transcription profiling by tiling array (39)
RIP-seq (39)
Transcription profiling by SAGE (33)
Transcription profiling by RT-PCR (22)
Proteomic profiling by array (20)
High-throughput sequencing (16)
Cell line - High-throughput sequencing (16)
Genotyping by array (13)
RIP-chip by array (10)
RNA-seq of coding RNA from single cells (10)
RNA-seq of total RNA (10)
CLIP-seq (9)
MeDIP-seq (6)
RNAi profiling by array (6)
DNA-seq (6)
Animal - High-throughput sequencing (4)
MicroRNA profiling by high throughput sequencing (4)
MicroRNA profiling by array (4)
Bisulfite-seq (3)

Release Date

2013 (1443)
2022 (1369)
2015 (1304)
2023 (1260)
2025 (1259)
2021 (1211)
2024 (1078)
2010 (1070)
2014 (1024)
2012 (998)
2020 (935)
2011 (926)
2016 (811)
2019 (746)
2018 (614)
2017 (542)
2008 (362)
2009 (359)
2026 (191)
2007 (168)
2006 (98)
2005 (66)
2004 (42)
2003 (22)
2002 (20)
2001 (16)
2000 (14)
1998 (7)
1999 (4)
1997 (2)

Location

United States (7)
France (4)
United Kingdom (2)
Germany (2)
Switzerland (2)
Norway (1)
Sweden (1)
Belgium (1)
Japan (1)

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Golgi-IP, a tool for multimodal analysis of Golgi molecular content

The Golgi is a membrane-bound organelle that is essential for protein and lipid biosynthesis. It represents a central trafficking hub that sorts proteins and lipids to various destinations or for secretion from the cell. The Golgi has emerged as a docking platform for cellular signaling pathways inc...

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Salmonella FinO ProQ IP