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TranscriptomicsTranscription profiling of human 48 clinical breast cancer arrays to perform statistical identification of gene association by CID in application of constructing ER regulatory network
A variety of high-throughput techniques are now available for constructing comprehensive gene regulatory networks in systems biology. In this study, we report a new statistical approach for facilitating in silico inference of regulatory network structure. The new measure of association, coefficient ...
ORGANISM(S): Homo sapiens 
2009-07-19 | E-GEOD-17041 | biostudies-arrayexpress
GenomicsWhole Exome Sequencing Identifies TTC7A Mutations for Combined Immunodeficiency with Intestinal Atresia

Combined Immunodeficiency with Multiple Intestinal Atresias (CID-MIA) is a rare genetic disorder with the cause previously unknown. Symptoms of CID-MIA include atresias in the small and/or large intestine, as well as immunodeficiency. In this study, we sequenced the whole exome of 5 unrelated CID...

phs000641.v1.p1 | EGA
UnknownCenH3/CID incorporation is not dependent on the chromatin assembly factor CHD1 in Drosophila.
Not available
S-EPMC2852906 | biostudies-literature
TranscriptomicsTranscription profiling by array of prostate from mice at different stages of JOCK1 prostate cancer progression to identify FGFR1-mediated gene expression changes
FGFR1 mediated changes in gene expression at different stages of JOCK1 prostate cancer progression JOCK1 mice which express a prostate localize inducible version of the FGFR1 gene (iFGFR1) were used to determine what are the changes in gene expression at distinct stages of JOCK1 tumor progression. ...
ORGANISM(S): Mus musculus 
2008-03-04 | E-MEXP-1296 | biostudies-arrayexpress
UnknownThe Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region.
Not available
S-EPMC4991852 | biostudies-literature
GenomicsPol II chromatin immunoprecipitation in S. cerevisiae
In Saccharomyces cerevisiae short non-coding RNA (ncRNA) generated by RNA Polymerase II (Pol II) are terminated by the NRD complex consisting of Nrd1, Nab3 and Sen1. We now show that Pcf11, a component of the cleavage and polyadenylation complex (CPAC), is generally required for NRD-dependent transc...
ORGANISM(S): Saccharomyces cerevisiae 
2015-04-02 | E-GEOD-67483 | biostudies-arrayexpress
ProteomicsCharacterizing N-Glycosylation of Pilins and Flagellins from Haloferax volcanii
Mass spectrometric analysis of cesium chloride purified flagellins and pilins confirmed previously identified N-glycopeptides for FlgA1, revealed additional N-glycopeptides for FlgA1 and FlgA2 and characterized N-glycosylation of PilA1 and PilA2. Analyses were performed using different MS methods (w...
ORGANISM(S): Haloferax volcanii (Halobacterium volcanii) 
2020-05-11 | PXD011015 | Pride
Archaea Haloferax volcanii N-glycosylation Type iv pili Flagella 
ProteomicsComplementary CID and 351 nm UVPD tandem mass spectra enable effective de novo sequencing
This dataset accompanies a publication in which we present a strategy for acquisition and effective de novo peptide sequencing of complementary CID and 351 nm ultraviolet photodissociation (UVPD) MS/MS pairs. E. coli whole cell lysate is carbamylated to block lysine side chains, digested with trypsi...
ORGANISM(S): Escherichia Coli (ncbitaxon:562) 
2017-03-06 | MSV000080603 | MassIVE
TranscriptomicsStatistical identification of gene association by CID in application of constructing ER regulatory network
A variety of high-throughput techniques are now available for constructing comprehensive gene regulatory networks in systems biology. In this study, we report a new statistical approach for facilitating in silico inference of regulatory network structure. The new measure of association, coefficient ...
ORGANISM(S): Homo sapiens 
2009-07-10 | GSE17041 | GEO
TranscriptomicsThe gene expression changes by CID 70698683
CID 70698683 is a novel broad-spectrum antiviral compound. To understand the broad-spectrum antiviral mechanism, the cellular gene expression changes by the treatment of CID70698683 was measured. HEp-2 cells grown in 6-well plates were treated with 5 microM of CID 70698683 for overnight and the cell...
ORGANISM(S): Homo sapiens 
2015-11-25 | E-GEOD-72167 | biostudies-arrayexpress
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