Ixodes - OmicsDI

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Unknown (1705)
Genomics (359)
Transcriptomics (51)
Proteomics (27)
Models (2)
Other (1)
Metabolomics (1)

Organisms

Ixodes scapularis (17)
Mus musculus (12)
Ixodes ricinus (5)
Borreliella burgdorferi (5)
Homo sapiens (4)
Ehrlichia chaffeensis str. Arkansas (3)
Canis lupus familiaris (2)
Peromyscus leucopus (2)
Cavia porcellus (2)
Wolbachia pipientis (1)
Rickettsia conorii (1)
Rhipicephalus microplus (1)
Anaplasma phagocytophilum str. HZ (1)
Ehrlichia chaffeensis (1)
Ehrlichia chaffeensis str. West Paces (1)
Ehrlichia japonica (1)
Ehrlichia chaffeensis str. Saint Vincent (1)
Ehrlichia chaffeensis str. Osceola (1)
Ehrlichia chaffeensis str. Heartland (1)
Ehrlichia chaffeensis str. Wakulla (1)
Ehrlichia chaffeensis str. Liberty (1)
Ehrlichia chaffeensis str. Jax (1)
Anopheles coluzzii (1)
Ixodes pacificus (1)
Chlamydia trachomatis (1)
Yersinia pestis (1)
Borreliella burgdorferi B31 (1)
Coxiella burnetii (1)
Streptococcus pyogenes (1)
Staphylococcus aureus (1)

Organisms

Ixodes scapularis (55)
Ixodes ricinus (37)
tick metagenome (10)
Ixodes persulcatus (8)
Mus musculus (8)
Borreliella burgdorferi (7)
Homo sapiens (6)
insect metagenome (5)
Ixodes pacificus (4)
Borrelia miyamotoi (3)
Ixodes granulatus (2)
Ixodes ovatus (2)
Ixodes uriae (2)
Rickettsia endosymbiont of Ixodes scapularis (2)
Ixodes acutitarsus (2)
Ixodes holocyclus (2)
Borreliella burgdorferi B31 (2)
Borreliella afzelii Tom3107 (2)
Borreliella garinii (2)
Anaplasma phagocytophilum (2)
Powassan virus (2)
Ixodes pavlovskyi (2)
Rickettsia (2)
Candidatus Midichloria mitochondrii IricVA (1)
Rickettsia helvetica C9P9 (1)
Borreliella bissettiae DN127 (1)
Borreliella burgdorferi JD1 (1)
Borreliella burgdorferi N40 (1)
Rickettsiella massiliensis 20B (1)
Borreliella garinii Far04 (1)

Repository

ENA (357)
geo (42)
pride (23)
biostudies-arrayexpress (12)
BioModels (2)
MassIVE (2)
PAXDB (2)
MetaboLights (1)

Tissue

Saliva (7)
Midgut (4)
Salivary gland (3)
Cell culture (1)
Colon (1)
Early embryonic cell (1)
Gut juice (1)
Hemolymph (1)
Ovary (1)
Saliva-secreting gland (1)
Synganglion (1)

Disease

Human granulocytic anaplasmosis (1)
Lyme disease (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (12)
Bottom-up proteomics (6)
Data-dependent acquisition (4)
Data-independent acquisition (2)
Gel-based experiment (2)
Mass spectrometry (1)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

Q-Exactive HF (1)
TimsTOF Pro (1)
Q Exactive (1)

Publication Date

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2023 (6)
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2014 (3)
2011 (3)
2019 (3)
2017 (3)
2013 (2)
2010 (2)
2018 (2)

UNIPROT ID/AC

Q0WB82 (2)
P0AAD4 (2)
Q7CH92 (2)
Q7CHI6 (2)
Q0WI04 (2)
P0AGD3 (2)
Q7CJI9 (2)
Q4Z2Z4 (2)
Q7CJ22 (2)
Q7CKU7 (2)
Q74WT5 (2)
Q0WJB5 (2)
P60752 (2)
Q0WH20 (2)
P0ABU7 (2)
Q0WIZ0 (2)
Q7CGI6 (2)
P0ABV2 (2)
Q0WBR9 (2)
Q7CH41 (2)
Q180F2 (2)
Q7CG73 (2)
P25519 (2)
P0C0L7 (2)
Q0WCN6 (2)
Q0WD20 (2)
Q0WAH3 (2)
P0ABI4 (2)
P13738 (2)
Q7CG77 (2)

CHEBI ID

CHEBI:25597 (2)
CHEBI:7644 (2)
CHEBI:28368 (2)
CHEBI:44505 (2)
CHEBI:71339 (2)
CHEBI:48622 (2)
CHEBI:58754 (2)
CHEBI:11993 (2)
CHEBI:20375 (2)
CHEBI:36148 (2)
CHEBI:20374 (2)
CHEBI:1838 (2)
CHEBI:24328 (2)
CHEBI:14323 (2)
CHEBI:39153 (2)
CHEBI:12156 (2)
CHEBI:20623 (2)
CHEBI:39151 (2)
CHEBI:2115 (2)
CHEBI:16120 (2)
CHEBI:18685 (2)
CHEBI:42060 (2)
CHEBI:342 (2)
CHEBI:44073 (2)
CHEBI:11002 (2)
CHEBI:15588 (2)
CHEBI:18686 (2)
CHEBI:133047 (2)
CHEBI:73912 (2)
CHEBI:17201 (2)

Metabolite Name

Arginine phosphate (1)
3-phosphoserine (1)
Cyano-alanine (1)
P-toluic acid (1)
Harmane (1)
Guanosine-2',3'-cyclic monophosphate (1)
Cyclo(pro-tyr) (1)
2'-deoxyadenosine 3'-monophosphate (1)
Erythrose (1)
2-hydroxyoleate (1)
Lactobacillic acid (1)
Prolylhydroxyproline (1)
2'-AMP (1)
4-ethylphenyl sulfate (1)
Pyridoxine phosphate (1)
Homoserine lactone (1)
N-alpha-acetylornithine (1)
N6,N6-dimethyladenosine (1)
Folate (1)
2-dimethylaminoethanol (1)
Agmatine (1)
Citraconate/glutaconate (1)
Tryptophylglycine (1)
TMP (1)
Ribulonate/xylulonate/lyxonate* (1)
5'- GMP (1)
Dihomolinoleate (20:2n6) (1)
3-hydroxyadipate* (1)
2-palmitoleoyl-GPC* (16:1)* (1)
1-palmitoyl-GPI* (16:0) (1)

First Public Date

2014 (43)
2024 (42)
2026 (37)
2023 (37)
2022 (32)
2013 (29)
2020 (26)
2025 (23)
2021 (23)
2019 (17)
2016 (14)
2017 (13)
2018 (11)
2015 (10)

Modelling Approach

Constraint-based model (2)

Lab affiliation

Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branisovska 1160/31, 37005 Ceske Budejovice, Czech Republic (4)
1Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel (1)
ANSES, INRAE, Ecole Nationale Vétérinaire d’Alfort, UMR BIPAR, Laboratoire de Santé Animale, 94700 Maisons-Alfort, France (1)
Bioengineering (1)
Department of Immunology Luxembourg Institute of Health Luxembourg (1)
Department of Microbiology and Immunology University of Maryland School of Medicine USA (1)
Department of Veterinary Pathobiology College of Veterinary Medicine Texas A & M University College Station Texas USA ( lab head ) (1)
Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX, USA (1)
Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, Texas,United States of America (1)
Entomology Dept., 740 Russell Labss, University of Wisconsin-Madison, USA (1)
Institute of Parasitology, Biology Centre, Ceske Budejovice (1)
Instituto de Ecología A.C. (1)
Proteomics Lab. SaBio research group. Instituto de Investigación en Recursos Cinegéticos, IREC (CSIC-UCLM-JCCM) (1)
SaBio (Health and Biotechnology), Instituto de Investigación en Recursos Cinegéticos (IREC, CSIC-UCLM-JCCM), University of Castilla-La Mancha, 13071, Ciudad Real, Spain. (1)
Senior Research Fellow at MRC University of Glasgow Centre for Virus Research (1)
Texas A&M University College of Biomedical Sciences and Veterinary Medicine Department of Veterinary Pathobiology Mulenga Laboratory College Station, Texas, USA 77843 (1)
The University of Southern Mississippi (1)
UMR 117 CIRAD-INRA ASTRE Montpellier, France (1)
Vector-Pathogen-Host Interaction Unit, Laboratory of Malaria and Vector Research, NIAID/NIH, Rockville, Maryland 20852, USA (1)
Yale University, Department of Internal Medicine (1)

Tags

pathogen (33)
pathogen:bacterium (29)
pathogen:virus (4)
xref:PubMed:37846980 (3)
xref:PubMed:26856261 (2)
xref:PubMed:19505540 (2)
xref:PubMed:28202075 (2)
xref:PubMed:39470213 (2)
xref:PubMed:20935092 (2)
xref:PubMed:26180832 (2)
xref:PubMed:26419825 (1)
xref:PubMed:38508929 (1)
xref:PubMed:21690562 (1)
xref:PubMed:21712043 (1)
xref:PubMed:39640918 (1)
xref:PubMed:22535934 (1)
xref:PubMed:22056929 (1)
xref:PubMed:37862360 (1)
xref:PubMed:35231145 (1)
xref:PubMed:22309607 (1)
xref:PubMed:30478087 (1)
xref:PubMed:34156261 (1)
xref:PubMed:42395505 (1)
xref:PubMed:32668699 (1)
xref:PubMed:28878331 (1)
xref:PubMed:21915290 (1)
xref:PubMed:26813420 (1)
xref:PubMed:31235752 (1)
xref:PubMed:22628513 (1)
xref:PubMed:39872517 (1)

IsPrivate

False (2)

Submitter Keywords

FROG (2)
Not Peer Reviewed (2)

Classification

bacteria (29)
viruses (4)

Study type

Transcription profiling by array (6)
RNA-seq of coding RNA (3)
Transcription profiling by tiling array (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)

Release Date

2021 (162)
2022 (159)
2023 (158)
2024 (145)
2020 (126)
2025 (119)
2019 (107)
2018 (94)
2016 (91)
2017 (81)
2014 (79)
2015 (68)
2013 (44)
2012 (43)
2011 (42)
2010 (33)
2009 (25)
2008 (24)
2026 (18)
2007 (16)
2004 (14)
2005 (11)
2003 (11)
1999 (10)
2006 (9)
2002 (9)
2001 (8)
1998 (6)
2000 (5)

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Transcriptional profiling of the host cutaneous response to Ixodes scapularis

Introduction: Ixodes scapularis ticks are hematophagous arthropods capable of transmitting many infectious agents to humans. The process of blood feeding is an extended and continuous interplay between tick and host responses. While this process has been studied extensively in vitro, no global under...

ORGANISM(S): Mus musculus

2012-02-17 | E-GEOD-33345 | biostudies-arrayexpress

Early immunologic events at the tick-host interface

Ixodes species ticks are competent vectors of tick-borne viruses including tick-borne encephalitis and Powassan encephalitis. Tick saliva has been shown to facilitate and enhance viral infection. This likely occurs by saliva-mediated modulation of host responses into patterns favorable for viral i...

ORGANISM(S): Mus musculus

2012-12-21 | E-GEOD-39100 | biostudies-arrayexpress

Acacia ixodes

PRJNA1067694 | ENA

Ixodes scapularis strain:Wikel colony

Genome sequencing of the black-legged tick Ixodes scapularis

PRJNA16232 | ENA

Ixodes persulcatus

Ixodes persulcatus Metagenome

PRJNA1181571 | ENA

Ixodes persulcatus

Ixodes persulcatus Genome sequencing

PRJNA1174404 | ENA

Ixodes ricinus microbiota

PRJNA506875 | ENA

Rickettsia endosymbiont of Ixodes scapularis isolate:REIS

Rickettsia endosymbiont of Ixodes scapularis

PRJNA33979 | ENA

Ixodes ricinus Raw sequence reads

PRJNA870490 | ENA

Ixodes persulcatus

Ixodes persulcatus Raw sequence reads

PRJNA576759 | ENA

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