Ja Johnson J - OmicsDI

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Unknown (2444)
Proteomics (56)
Metabolomics (21)
Genomics (13)
Transcriptomics (12)

Organisms

Homo sapiens (42)
Mus musculus (8)
Arabidopsis thaliana (2)
Myzus persicae (1)
Pogonomyrmex rugosus (1)
Potato leafroll virus (1)

Repository

MassIVE (29)
pride (25)
MetaboLights (20)
biostudies-arrayexpress (16)
EGA (9)
PanoramaPublic (2)
GNPS (1)

Tissue

Epithelial cell (4)
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Cell culture (3)
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Hippocampal mossy fiber (1)
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Primary cell (1)
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Disease

Melanoma (5)
Avian influenza (3)
Influenza (3)
Bone osteosarcoma (1)
Breast cancer (1)
Malignant neoplasm of ovary (1)
Non-small cell lung carcinoma (1)

Technology Type

Mass Spectrometry (25)
Mass spectrometry (15)
Shotgun proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (9)
NMR spectroscopy (5)
Bottom-up proteomics (5)
Mass spectrometry assay (3)
Data-dependent acquisition (2)
Illumina HiSeq 2500 (1)
Data-independent acquisition (1)
SRM/MRM (1)

Instrument Platform

GC-MS (9)
LTQ Orbitrap Velos (9)
Liquid Chromatography MS - positive - reverse phase (9)
GC MS (6)
Liquid Chromatography MS - negative - reverse phase (5)
Nuclear Magnetic Resonance (NMR) - (5)
QExactive (2)
Liquid Chromatography MS - positive - hilic (2)
LTQ FT (1)
MaXis (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Agilent SPE-IMS-MS (1)
Flow injection analysis MS – POS (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
ESI-ION-TRAP (1)

Publication Date

2023 (14)
2016 (13)
2024 (9)
2021 (8)
2017 (6)
2022 (6)
2015 (5)
2026 (4)
2014 (3)
2011 (3)
2010 (3)
2018 (3)
2020 (3)
2025 (3)
2012 (2)
2008 (2)
2007 (2)
2013 (1)
2006 (1)
2019 (1)

CHEBI ID

CHEBI:16449 (5)
CHEBI:24898 (5)
CHEBI:25017 (5)
CHEBI:25094 (5)
CHEBI:27266 (5)
CHEBI:15428 (4)
CHEBI:16359 (4)
CHEBI:16811 (4)
CHEBI:17234 (4)
CHEBI:18186 (4)
CHEBI:30769 (4)
CHEBI:78320 (4)
CHEBI:15354 (3)
CHEBI:15366 (3)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:16135 (3)
CHEBI:17368 (3)
CHEBI:17418 (3)
CHEBI:17568 (3)
CHEBI:17750 (3)
CHEBI:17790 (3)
CHEBI:18012 (3)
CHEBI:26806 (3)
CHEBI:28865 (3)
CHEBI:30768 (3)
CHEBI:30772 (3)
CHEBI:30915 (3)
CHEBI:35038 (3)
CHEBI:1148 (2)

Metabolite Name

Leucine (4)
Succinate (4)
Alanine (3)
Cholic acid (3)
Isoleucine (3)
Methionine (3)
Tris(2-butoxyethyl) phosphate (3)
Valine (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
4-Hydroxybenzoic acid (2)
9(10)-EpOME (2)
AMP (2)
Adenosine (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Caffeine (2)
Choline (2)
Citric acid (2)
Elaidic acid (2)
Guanine (2)
Lactic acid (2)
Lysine (2)
Lyso-PC(16:0) (2)
Methanol (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurocholic acid (2)
Xanthine (2)

Modification

Not available (1)

Study type

Transcription profiling by array (8)
ChIP-seq (4)
RNA-seq of coding RNA (2)
Unknown experiment type (1)
Other (1)

Release Date

2021 (238)
2022 (219)
2025 (210)
2024 (208)
2023 (207)
2020 (167)
2019 (154)
2018 (143)
2015 (133)
2017 (125)
2016 (124)
2014 (113)
2013 (87)
2012 (75)
2010 (60)
2011 (58)
2009 (40)
2026 (36)
2008 (33)
2007 (10)
2006 (8)
2005 (5)
2002 (3)
2004 (2)
2003 (1)
1998 (1)

Lab affiliation

Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (3)
Department of Cell and Developmental Biology, Neuroscience Graduate Program, Department of Neurology University of Michigan Medical School, Ann Arbor, MI 48109-2200 (2)
Department of Developmental, Molecular and Chemical Biology Tufts University School of Medicine Boston MA 02111 (1)
Department of Environmental Toxicology, University of California, Davis, USA (1)
Department of Integrated Immunobiology Duke School of Medicine Durham, NC, USA (1)
Department of Integrated Immunobiology Duke School of Medicine Durham, NC, USA (1)
Department of Laboratory Medicine Department of Bioengineering and Therapeutic Sciences University of California, San Francisco (1)
Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA. (1)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Dept. Cellular Molecular Pharmacology, University of San Francisco (UCSF), USA (1)
Dept. Cellular and Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Director of The Breast Tumor Immunology Laboratory Women’s Cancer Program Dana-Farber Cancer Institute Instructor in Medicine Harvard Medical School (1)
Icahn School of Medicine at Mount Sinai (1)
Professor Cellular and Molecular Medicine Department University of Arizona College of Medicine - Tucson (1)
Proteomics (1)
UCLA (1)
UCSF (1)
USDA-ARS, Cornell University, Boyce Thompson Institute (1)
Weizmann Institute of Science Israel (1)

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Transcription profiling of mouse vehicle and sAPPalpha-treated hippocampal slice cultures

Gene expression changes induced by alpha-secretase cleaved amyloid precursor protein (sAPPalpha) in organotypic hippocampal slice cultures of male, postnatal day 15 mice (C57B6/SJL). Hippocampal slice cultures were treated with phosphate buffered saline (GSM26700, GSM26701, GSM26702) or 1 nM sAPPal...

ORGANISM(S): Mus musculus

2007-10-10 | E-GEOD-1555 | biostudies-arrayexpress

Improving Patient Care Using the Johnson-Neyman Analysis of Heterogeneity of Treatment Effects According to Individuals' Baseline Characteristics.

Not available

S-EPMC4335806 | biostudies-literature

Transcription profiling of mouse overexpressing APPSw mice vs. controls

Gene expression changes in mice overexpressing amyloid precursor protein with the Swedish mutation (Tg2576; APPSw). The gene expression levels in male 12 month-old APPSw mice (GSM26708, GSM26709) were compared to those in male nontransgenic littermate control mice (GSM26706, GSM26707). Data were a...

ORGANISM(S): Mus musculus

2008-06-11 | E-GEOD-1556 | biostudies-arrayexpress

Multiomic single-cell sequencing defines tissue-specific responses in Stevens-Johnson syndrome and toxic epidermal necrolysis.

Not available

S-EPMC11461852 | biostudies-literature

Neonatal Dubin-Johnson Syndrome and its Differentiation from Biliary Atresia.

Not available

S-EPMC9647112 | biostudies-literature

The effects of essential oil mouthrinses with or without alcohol on plaque and gingivitis: a randomized controlled clinical study.

Not available

S-EPMC5763666 | biostudies-literature

Quantitative analysis of the effects of essential oil mouthrinses on clinical plaque microbiome: a parallel-group, randomized trial.

Not available

S-EPMC11102605 | biostudies-literature

Quantitative analysis of the effects of brushing, flossing, and mouthrinsing on supragingival and subgingival plaque microbiota: 12-week clinical trial.

Not available

S-EPMC11102210 | biostudies-literature

Untargeted metabolomics analyses and contaminant chemistry of Dreissenid mussels at the Maumee River Area of Concern in the Great Lakes

Bivalves serve as an ideal ecological indicator; hence, their use by the NOAA Mussel Watch Program to monitor environmental health. This study aimed to expand the baseline knowledge of using metabolic end points in environmental monitoring by investigating the dreissenid mussel metabolome in the ...

2024-06-03 | MTBLS6311 | MetaboLights

Protein kinase Cepsilon interacts with cytochrome c oxidase subunit IV and enhances cytochrome c oxidase activity in neonatal cardiac myocyte preconditioning.

Not available

S-EPMC1383677 | biostudies-literature

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