Jackson N N - OmicsDI

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Transcriptomics (738)
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Mus musculus (677)
Homo sapiens (283)
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Bradyrhizobium diazoefficiens USDA 110 (2)
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synthetic construct (1)

Organisms

Mus musculus (106)
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Repository

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Disease

Disease free (8)
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Chemical colitis (1)
Chronic obstructive pulmonary disease (1)
Developmental and epileptic encephalopathy 1 (1)
Developmental and epileptic encephalopathy 9 (1)
Diabetes mellitus (1)
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Down syndrome (1)
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Technology Type

Mass Spectrometry (184)
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ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
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Instrument Platform

NextSeq 500 (19)
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Illumina HiSeq 4000 (8)
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2100 Bioanalyzer (Agilent); Axio Imager.Z2 (ZEISS) (1)
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Axon Instruments GenePix 4000B scanner (1)
MouseWG-6_V2_0_R3_11278593_A (1)
GeneChip 3000 7G scanner (Affymetrix) (1)
GentleMACS Dissociator with M tubes (Miltenyi Biotec), QIAzol Lysis Reagent (Qiagen), and RNeasy Microarray Tissue Mini Kit with optional DNase treatment (Qiagen) (1)
Hybridization Cocktails, Mouse Transcriptome 1.0 ST GeneChips, GeneChip Hybridization oven 645 (all Affymetrix) (1)
Bioanalyzer (Agilent), Nanodrop (Thermo Fisher Scientific), and Affymetrix WT Plus Reagent Kit (1)
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Other (1)
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NA (1)
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Publication Date

2013 (109)
2015 (108)
2014 (108)
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2012 (69)
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2008 (48)
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UNIPROT ID/AC

P05231 (1)
P08887 (1)
A0A024R8H9 (1)
A0A0A0MR66 (1)
B3KML9 (1)
B4DRV9 (1)
C9JWC3 (1)
E7EVA0 (1)
E9PB61 (1)
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O00203 (1)
O00499 (1)
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O00566 (1)
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O14715 (1)
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O14974-4 (1)
O15014 (1)
O15020 (1)
O15294 (1)
O15446 (1)

CHEBI ID

CHEBI:15354 (17)
CHEBI:15428 (16)
CHEBI:15891 (16)
CHEBI:27897 (16)
CHEBI:16811 (15)
CHEBI:18012 (15)
CHEBI:30769 (15)
CHEBI:15741 (14)
CHEBI:16449 (14)
CHEBI:17154 (14)
CHEBI:17822 (14)
CHEBI:18186 (14)
CHEBI:18237 (14)
CHEBI:22660 (14)
CHEBI:24898 (14)
CHEBI:25094 (14)
CHEBI:27266 (14)
CHEBI:28044 (14)
CHEBI:32816 (14)
CHEBI:16919 (13)
CHEBI:17368 (13)
CHEBI:25017 (13)
CHEBI:26986 (13)
CHEBI:28300 (13)
CHEBI:16010 (12)
CHEBI:16737 (12)
CHEBI:17568 (12)
CHEBI:17596 (12)
CHEBI:17750 (12)
CHEBI:18257 (12)

Metabolite Name

Adenosine (7)
Alanine (7)
Choline (7)
Creatine (7)
Fumarate (7)
Glycine (7)
Isoleucine (7)
Lactate (7)
Leucine (7)
Phenylalanine (7)
Proline (7)
Serine (7)
Succinate (7)
Taurine (7)
Threonine (7)
Tryptophan (7)
Tyrosine (7)
Valine (7)
12,13-DiHOME (6)
AMP (6)
Arginine (6)
Asparagine (6)
Aspartate (6)
Betaine (6)
Carnitine (6)
Carnosine (6)
Choline (6)
Creatine (6)
Lysine (6)
N-acetylputrescine (6)

First Public Date

2025 (26)
2014 (24)
2023 (19)
2018 (14)
2026 (13)
2024 (13)
2020 (12)
2019 (11)
2013 (9)
2022 (7)
2021 (6)
2015 (3)
2017 (2)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

Division of Maternal Fetal Medicine Department of Obstetrics and Gynecology Oregon Health & Science University 3181 SW Sam Jackson Park Road, Mail Code L-458, Portland, OR, 97239, USA (3)
Division of Pharmacotherapy and Experimental Therapeutics, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, USA (3)
Washington University in St. Louis (3)
Department of Molecular Biology and Biotechnology, The University of Sheffield, UK. (2)
Department of Molecular Microbiology & Immunology Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (2)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (2)
Institute of Molecular Biology (IMB), Mainz, Germany (2)
School of Biosciences, University of Sheffield (2)
School of Biosciences, University of Sheffield, UK (2)
Section of Paediatric Infectious Diseases, Faculty of Medicine, Imperial College London, UK (2)
1. Cancer Signalling Research Group, School of Biomedical Sciences and Pharmacy, College of Health, Medicine and Wellbeing, University of Newcastle, Callaghan, NSW, AUSTRALIA 2. Precision Medicine Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW, AUSTRALIA 3. Paediatric Program, Mark Hughes Foundation Centre for Brain Cancer Research, College of Health, Medicine, and Wellbeing, Callaghan, NSW, AUSTRALIA (1)
1Division of Radiation Health, 2Department of Pharmaceutical Sciences, 3Neurobiology & Developmental Sciences, (1)
Allakos Inc. (1)
Anesthesiology & Perioperative Medicine Oregon Health & Science University 3181 SW Sam Jackson Park Road Portland, Oregon 97239, USA (1)
Associate Professor of Chemistry and Chemical Biology, DEPARTMENT of CHEMISTRY & CHEMICAL BIOLOGY, HARVARD UNIVERSITY (1)
Associate Professor, Immunobiology Associate Research Scientist, A2DRC The University of Arizona, USA (1)
Baker Heart & Diabetes Institute (1)
Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, UK. (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine (1)
Bernstein Professor Emeritus in Adult Psychiatry Department of Psychiatry and Behavioral Sciences University of Minnesota Medical School (1)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Boston University School of Medicine (1)
Brigham Women's Hospital, Harvard medical school (1)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (1)
Calico Life Sciences (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Cardiovascular Research Institute (1)
Centre Algatech, Institute of Microbiology, Academy of Sciences of the Czech Republic, Třeboň,CZ. (1)
Charles Perkins Centre, University of Sydney (1)
Charles Perkins Centre, University of Sydney, Australia (1)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

Modification

Not available (2)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (493)
RNA-seq of coding RNA (116)
ChIP-seq (40)
Proteomic profiling by array (40)
Other (17)
Methylation profiling by high throughput sequencing (16)
Methylation profiling by array (13)
RNA-seq of non coding RNA (13)
Unknown experiment type (11)
RNA-seq of coding RNA from single cells (11)
Comparative genomic hybridization by array (10)
RNA-seq of total RNA (7)
Transcription profiling by RT-PCR (6)
Genotyping by array (5)
DNA-seq (5)
Antigen profiling (3)
MicroRNA profiling by array (3)
Transcription profiling by SAGE (2)
ChIP-chip by tiling array (2)
High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
ChIP-chip by array (2)
Cell line - Single-cell sequencing (1)
Baseline (1)
MNase-seq (1)
Differential (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Whole chromosome random sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)

Release Date

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2000 (10)
2003 (7)
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2002 (5)
1998 (5)
1999 (4)
1997 (3)

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Expression data from wild-type and HMGN1 knockout mice injected with N-nitrosodiethylamine

HMGN1 contributes to the shortened latency of liver tumorigenesis by changing a chromatin structure and expression of relevant genes To assess the molecular mechanisms underlying accelerated tumor development in Hmgn1-/- mice, we performed the gene expression profiling of liver cells at early stages...

ORGANISM(S): Mus musculus

2013-08-24 | E-GEOD-44356 | biostudies-arrayexpress

NHLBI TOPMed: The Jackson Heart Study

Since there is a greater prevalence of cardiovascular disease among African Americans, the purpose of the Jackson Heart Study (JHS) is to explore the reasons for this disparity and to uncover new approaches to reduce it. The JHS is a large, community-based, observational study whose 5306 particip...

phs000964 | dbGaP

Electrocardiogram machine learning for detection of cardiovascular disease in African Americans: the Jackson Heart Study.

Not available

S-EPMC8139412 | biostudies-literature

Jackson Heart Study (JHS) Cohort

PRJNA76049 | ENA

Expression of the neuronal tRNA n-Tr20 regulates synaptic transmission and seizure susceptibility

PRJNA637076 | ENA

The Jackson Heart Study (JHS)

The Jackson Heart Study (JHS) is a large, community-based, observational study whose participants were recruited from urban and rural areas of the three counties (Hinds, Madison and Rankin) that make up the Jackson, MS metropolitan statistical area (MSA). Participants were enrolled from each of 4...

phs000286 | dbGaP

Transcriptional profile of mammary mouse MMTV-PyMT tumors and mammary gland from FVB/N mice

PRJNA1237382 | ENA

Time-series analysis of satellite-derived fine particulate matter pollution and asthma morbidity in Jackson, MS.

Not available

S-EPMC10072932 | biostudies-literature

Prevalence and correlates of obstructive sleep apnea among African Americans: the Jackson Heart Sleep Study.

Not available

S-EPMC6187109 | biostudies-literature

Associations between everyday discrimination and sleep quality and duration among African-Americans over time in the Jackson Heart Study.

Not available

S-EPMC8664593 | biostudies-literature