Jakob F F - OmicsDI

OmicsDI

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Unknown (354)
Proteomics (113)
Genomics (34)
Transcriptomics (25)
Metabolomics (8)
Genomic (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (56)
Sus scrofa (7)
Mus musculus (7)
Capra hircus (1)
Mytilus edulis (1)
Gallus gallus (1)
Danio rerio (1)
Fusarium sinicum (1)
Latilactobacillus sakei (1)
Leishmania infantum (1)
Liquorilactobacillus hordei (1)
Photinus pyralis (1)
Saccharomyces cerevisiae (1)
Xanthomonas retroflexus (1)

Repository

PAXDB (88)
EGA (32)
biostudies-arrayexpress (27)
pride (17)
MetaboLights (8)
MassIVE (5)
PanoramaPublic (3)
dbGaP (1)
GPMDB (1)

Tissue

Blood (4)
Mucosal invariant T cell (4)
Epithelial cell (3)
Cell line cell (2)
Monocyte (2)
Blood plasma (1)
Brain (1)
Cell culture (1)
HAP-1 cell (1)
HeLa cell (1)
Hippocampus (1)
K-562 cell (1)
Liver (1)
Lung (1)
Stationary phase culture (1)

Disease

Not Available (1)
Cervix carcinoma (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (12)
Mass spectrometry (8)
SWATH MS (3)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
ILLUMINA, Illumina HiSeq 2000 (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, GenomeWideSNP_6-BirdseedV2 (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Q Exactive (5)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - negative - reverse phase (2)
CL2 lab (1)
Punch biopsy - fibroblasts; commercial stock - HEKa (1)
Instrument (1)
6550 iFunnel Q-TOF LC/MS (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive - reverse phase (1)
MS Imaging - (1)
Q Exactive Plus (Thermo Scientific) (1)
TSQ Quantum Ultra (Thermo Scientific) (1)

Publication Date

2020 (97)
2012 (8)
2021 (5)
2023 (5)
2013 (4)
2019 (4)
2009 (3)
2008 (3)
2022 (3)
2018 (3)
2024 (2)
2010 (2)
2007 (2)
2017 (2)
2014 (1)
2016 (1)
2025 (1)

UNIPROT ID/AC

14310_ARATH (3)
14311_ARATH (3)
14332_ARATH (3)
14333_ARATH (3)
14334_ARATH (3)
14335_ARATH (3)
14336_ARATH (3)
14337_ARATH (3)
14338_ARATH (3)
14339_ARATH (3)
1A112_ARATH (3)
2A5A_ARATH (3)
2A5B_ARATH (3)
2A5G_ARATH (3)
2AAA_ARATH (3)
2AAB_ARATH (3)
2AAG_ARATH (3)
2AB2A_ARATH (3)
2AB2C_ARATH (3)
2AB2D_ARATH (3)
2ABA_ARATH (3)
2ABB_ARATH (3)
3702.AT3G04400.1 (3)
3702.AT3G53750.1 (3)
3702.AT3G56800.1 (3)
3702.AT3G59540.1 (3)
3702.AT3G62840.1 (3)
3702.AT4G09800.1 (3)
3702.AT4G23570.3 (3)
3702.AT4G33865.1 (3)

CHEBI ID

CHEBI:15428 (3)
CHEBI:16919 (3)
CHEBI:30769 (3)
CHEBI:32816 (3)
CHEBI:15727 (2)
CHEBI:15859 (2)
CHEBI:15891 (2)
CHEBI:15978 (2)
CHEBI:16027 (2)
CHEBI:16199 (2)
CHEBI:16335 (2)
CHEBI:16610 (2)
CHEBI:16695 (2)
CHEBI:16742 (2)
CHEBI:17126 (2)
CHEBI:17148 (2)
CHEBI:17234 (2)
CHEBI:17239 (2)
CHEBI:17345 (2)
CHEBI:17361 (2)
CHEBI:17562 (2)
CHEBI:17768 (2)
CHEBI:17927 (2)
CHEBI:18012 (2)
CHEBI:18066 (2)
CHEBI:18300 (2)
CHEBI:25017 (2)
CHEBI:27897 (2)
CHEBI:28044 (2)
CHEBI:30915 (2)

Metabolite Name

Glycine (4)
Glucose (3)
Leucine (3)
Phenylalanine (3)
Tryptophan (3)
3-phosphoglycerate (2)
Adenine (2)
Adenosine (2)
Alanine (2)
Arginine (2)
Beta-alanine (2)
Carnitine (2)
Carnosine (2)
Citric acid (2)
Creatine (2)
Creatine (2)
Cystathionine (2)
Cysteine (2)
Cytidine (2)
Cytidine (2)
Glucose-6-phosphate (2)
Glutamine (2)
Glutathione (2)
Glycerol (2)
Histidine (2)
Isoleucine (2)
Lysine (2)
Maltose (2)
N-acetylalanine (2)
N-acetylputrescine (2)

Study type

Transcription profiling by array (18)
ChIP-seq (2)
RNA-seq of non coding RNA (2)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
ATAC-seq (1)
RNA-seq of coding RNA (1)

Release Date

2020 (42)
2025 (42)
2021 (40)
2022 (36)
2019 (30)
2024 (25)
2023 (25)
2017 (24)
2018 (21)
2014 (13)
2012 (13)
2016 (13)
2015 (12)
2013 (11)
2009 (6)
2008 (6)
2011 (6)
2026 (4)
2010 (3)
2007 (3)
2006 (2)
2001 (2)
2005 (1)
2004 (1)

Lab affiliation

Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany (4)
Institute of Molecular Medicine and Cell Research, University Freiburg (2)
1. Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia, Canada; 2. University of Victoria Genome BC Proteomics Centre, University of Victoria, Victoria, British Columbia, Canada; 3. Gerald Bronfman Department of Oncology, Jewish General Hospital, Montreal, Quebec, Canada; 4. Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada (1)
Associate Professor, Neurology UCSF Weill Institute for Neurosciences School of Medicine University of California, San Francisco (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University Munich, Freising, Germany (1)
Cellzome (1)
Department of Neurology and Weill Institute for Neurosciences, University of California, San Francisco (1)
Einstein Professor of Biochemistry Head, Institute of Biochemistry, Charité University Medicine, Berlin (1)
Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
Reserch Institute for Microbial Diseases, Osaka University (1)
TRIO Translational Research for Infectious Diseases and Oncology, Innere Med I, Uniklinik Köln, Köln (1)
University of Copenhagen Department of Biology Section of Microbiology Universitetsparken 15, building 1 2100 Copenhagen (1)