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GenomicsAmplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq
ChIP-seq is used to map transcription factor occupancy and generate epigenetic profiles genome-wide. The requirement of nano-scale ChIP DNA for generation of sequencing libraries has impeded ChIP-seq on in vivo tissues of low cell numbers. We describe a robust, simple and scalable methodology for Ch...
ORGANISM(S): Mus musculus 
2015-02-01 | E-GEOD-55850 | biostudies-arrayexpress
GenomicsTemporal mapping of C/EBPα and –β binding during liver regeneration
Temporal mapping of C/EBPα and –β binding during liver regeneration reveals dynamic occupancy and specific regulatory codes for homeostatic and cell cycle gene batteries. Timeseries ChIP-seq of transcription factors C/EBPα and –β, and Pol II in time points 0, 3, 8, 16, 24, 36, 48, 168 hours after pa...
ORGANISM(S): Mus musculus 
2013-01-24 | E-GEOD-42321 | biostudies-arrayexpress
TranscriptomicsChromatin immunoprecipitation to identify Tinman protein binding during embryonic delelopment in D. melanogaster
Genomewide mapping of Drosophila Tinman protein binding during embryonic development. Three consecutive timepoints (2-4, 4-6, 6-8 hrs after egg-laying) were assayed in four independent repeats each. Two different antibodies were used to precipitate the Tinman protein. Additionally the respective pre...
ORGANISM(S): Drosophila melanogaster 
2009-04-16 | E-TABM-558 | biostudies-arrayexpress
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