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GenomicsAuthentication and characterisation of a new oesophageal adenocarcinoma cell line: MFD-1
Whole genome sequencing (WGS) from snap-frozen oesophageal tumour tissue and germline nucleic acids isolated from peripheral blood mononuclear cells (PBMC) was performed as part of the International Cancer Genome Consortium project and OCCAMS consortium (1,2). Filtered read sequences were mapped to ...
ORGANISM(S): Homo sapiens 
2016-09-09 | E-MTAB-4600 | biostudies-arrayexpress
UnknownPlasticity in Neuroblastoma Cell Identity Defines a Noradrenergic-to-Mesenchymal Transition (NMT).
Not available
S-EPMC8230375 | biostudies-literature
UnknownSV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability.
Not available
S-EPMC4896370 | biostudies-literature
UnknownHMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics.
Not available
S-EPMC5416852 | biostudies-literature
UnknownControl-free calling of copy number alterations in deep-sequencing data using GC-content normalization.
Not available
S-EPMC3018818 | biostudies-literature
TranscriptomicsBeta-catenin status in pediatric medulloblastomas
Medulloblastoma is the most frequent malignant pediatric brain tumor. Considerable efforts are dedicated to identify markers that help to refine treatment strategies. The activation of the Wnt/beta-catenin pathway occurs in 10-15% of medulloblastomas and has been recently described as a marker for f...
ORGANISM(S): Homo sapiens 
2009-02-02 | E-GEOD-12992 | biostudies-arrayexpress
UnknownSVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data.
Not available
S-EPMC2905550 | biostudies-literature
TranscriptomicsExpression data from sympathetic nervous system of KI Alk F1178L mice
Neuroblastoma is an embryonal neoplasm that remains of dramatic prognosis in its aggressive forms. Activating mutations of the ALK tyrosine kinase receptor have been identified in sporadic and familial cases of this cancer. We generated knock-in mice carrying an F1178L Alk mutation corresponding to ...
ORGANISM(S): Mus musculus 
2014-06-24 | E-GEOD-46584 | biostudies-arrayexpress
UnknownBET and CDK Inhibition Reveal Differences in the Proliferation Control of Sympathetic Ganglion Neuroblasts and Adrenal Chromaffin Cells.
Not available
S-EPMC9179499 | biostudies-literature
UnknownSegAnnDB: interactive Web-based genomic segmentation.
Not available
S-EPMC4029035 | biostudies-literature
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