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GenomicsA Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [ChIP-seq]
The genome-wide abundance of two histone modifications, H3K4me3 and H3K9ac, both associated with actively expressed genes, was monitored in Arabidopsis thaliana leaves at different time points during developmental senescence, along with expression in the form of RNA-seq data. H3K9ac and H3K4me3 mark...
ORGANISM(S): Arabidopsis thaliana 
2015-04-11 | E-GEOD-67776 | biostudies-arrayexpress
TranscriptomicsA Genome-wide Chronological Study of Gene Expression and Two Histone Modifications, H3K4me3 and H3K9ac, during Developmental Leaf Senescence [RNA-seq]
The genome-wide abundance of two histone modifications, H3K4me3 and H3K9ac, both associated with actively expressed genes, was monitored in Arabidopsis thaliana leaves at different time points during developmental senescence, along with expression in the form of RNA-seq data. H3K9ac and H3K4me3 mark...
ORGANISM(S): Arabidopsis thaliana 
2015-04-11 | E-GEOD-67777 | biostudies-arrayexpress
TranscriptomicsBisulfite-Seq and RNA-seq profiling of truffle (Tuber melanosporum)
We investigated the ascomycete truffle Tuber melanosporum exploits DNA methylation and transcription to cope with the more than 45,000 repeated elements that are present in its genome. Whole-genome bisulfite sequencing and RNA-sequencing, were performed on different developmental stages of this symb...
ORGANISM(S): Tuber melanosporum 
2014-01-01 | E-GEOD-49700 | biostudies-arrayexpress
TranscriptomicsTranscriptome of Nkx2-5-null atria
Atrial specific knockout of Nkx2-5 results in hyperplastic atria with ASD and conduction defects. To examine how Nkx2-5 regulates cardiac proliferation at late gestational stages, RNA-seq was performed. Examination of expression profile of 2 Nkx2-5-null atria and 3 controls
ORGANISM(S): Mus musculus 
2014-10-31 | E-GEOD-52080 | biostudies-arrayexpress
TranscriptomicsIntestinal subepithelial myofibroblasts support the growth of intestinal epithelial stem cells
Intestinal epithelial stem cells (ISCs) are the focus of recent intense study. Current in vitro models rely on supplementation with the Wnt agonist R-spondin1 to support robust growth, ISC self-renewal, and differentiation. Intestinal subepithelial myofibroblasts (ISEMFs) are important supportive ce...
ORGANISM(S): Mus musculus 
2013-12-20 | E-GEOD-52402 | biostudies-arrayexpress
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