Jayaraman J J - OmicsDI

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Unknown (314)
Proteomics (15)
Metabolomics (2)
Transcriptomics (1)

Organisms

Allexis (9)
Arabidopsis thaliana (9)
Entamoeba histolytica HM-1:IMSS-A (9)
Escherichia coli (9)
Homo sapiens (9)
Listeria monocytogenes (9)
Mus musculus (9)
Rattus norvegicus (9)
Saccharomyces cerevisiae (9)
Schizosaccharomyces pombe (9)
Shigella (9)
Shigella flexneri (9)
Solanum tuberosum (9)
Staphylococcus aureus (9)
Sus scrofa domesticus (9)
Zea mays (9)
Bacteria (8)
Borrelia (8)
Clostridium perfringens (8)
Eukaryota (8)
Hepatitis B virus (8)
Human betaherpesvirus 5 (8)
Influenza C virus (8)
Japanese encephalitis virus group (8)
Miscanthus x giganteus (8)
Mus musculus (8)
Mycobacterium tuberculosis (8)
Severe acute respiratory syndrome coronavirus 2 (8)
Staphylococcus aureus (8)
Escherichia coli (1)

Repository

pride (9)
PAXDB (6)
MetaboLights (2)
biostudies-arrayexpress (1)

Tissue

Urine (2)
Apical meristem (1)
Cardiac muscle cell (1)
Cell culture (1)
Colon (1)
Flower (1)
Heart (1)
Leaf (1)
Neural cell (1)
Root (1)
Root nodule (1)
Seed (1)
Stem (1)
Whole body (1)

Disease

Immunoglobulin light chain amyloidosis (1)
Kidney disease (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (9)
Shotgun proteomics (6)
Mass spectrometry (2)
Bottom-up proteomics (2)
Data-dependent acquisition (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2016 (7)
2025 (3)
2022 (2)
2021 (2)
2008 (1)
2026 (1)
2023 (1)
2020 (1)

UNIPROT ID/AC

3880.AES58538 (6)
3880.AES58539 (6)
3880.AES58557 (6)
3880.AES58577 (6)
3880.AES58595 (6)
3880.AES58596 (6)
3880.AES58598 (6)
3880.AES58611 (6)
3880.AES58637 (6)
3880.AES58673 (6)
3880.AES58697 (6)
3880.AES58766 (6)
3880.AES58788 (6)
3880.AES58833 (6)
3880.AES58880 (6)
3880.AES58897 (6)
3880.AES58900 (6)
3880.AES58960 (6)
3880.AES58990 (6)
3880.AES59003 (6)
3880.AES59180 (6)
3880.AES59185 (6)
3880.AES59286 (6)
3880.AES59334 (6)
3880.AES59339 (6)
3880.AES59397 (6)
3880.AES59531 (6)
3880.AES59549 (6)
3880.AES59555 (6)
3880.AES59608 (6)

CHEBI ID

CHEBI:1941 (2)
CHEBI:15318 (2)
CHEBI:15354 (2)
CHEBI:17750 (2)
CHEBI:17768 (2)
CHEBI:28842 (2)
CHEBI:16196 (2)
CHEBI:15756 (2)
CHEBI:15891 (2)
CHEBI:17368 (2)
CHEBI:25399 (1)
CHEBI:176852 (1)
CHEBI:176870 (1)
CHEBI:17059 (1)
CHEBI:176851 (1)
CHEBI:176850 (1)
CHEBI:45236 (1)
CHEBI:176868 (1)
CHEBI:176866 (1)
CHEBI:137722 (1)
CHEBI:176865 (1)
CHEBI:164570 (1)
CHEBI:136938 (1)
CHEBI:10041 (1)
CHEBI:60295 (1)
CHEBI:176863 (1)
CHEBI:49060 (1)
CHEBI:137237 (1)
CHEBI:139386 (1)
CHEBI:138419 (1)

Metabolite Name

Leucic acid (1)
Asn-Lys-His-His (1)
9S,12S,13S-trihydroxy-10E-octadecenoic acid (1)
1-(9Z-hexadecenoyl)-sn-glycero-3-phosphocholine (1)
Inosine-related (1)
Methylphosphonate (1)
Asn-Gly-Pro-His (1)
Pro-Val-Val-Pro (1)
1-octadecanoyl-sn-glycero-3-phosphocholine (1)
N-(quinolin-8-yl)methanesulfonamide (1)
Pentane-1,2,3,5-tetracarboxylic acid (1)
9Z-octadecenamide (1)
N-(11Z-eicosaenoyl)-ethanolamine (1)
1-octadecanoyl-2-sn-glycero-3-phosphate (1)
9-oxo-15S-hydroxy-5Z,10Z,13E,17Z-prostatetraenoic acid (1)
Delta4,5-unsaturated trigalacturonate (1)
(2'S,5'R)-4-methyl-l-(5'-methyl-2',3',4',5'-tetrahydro[2' ',3' '-bifuran]-5'-yl)pentan-2-one (1)
(5Z,7E,22E,24E,26E)-(1S,3R)-26a,26b-dihomo-27-nor-9,10-seco-5,7,10(19),22,24,26(26a)-cholestahexaene-1,3,26b-triol (1)
Trp-Cys-His (1)
9S-hydroxy-10E,12Z-octadecadienoic acid (1)
4-methoxy-3-indolylmethylisothiocyanate (1)
N-(9Z-octadecenoyl)-ethanolamine (1)
Withanolide D (1)
L-5-benzyl-hydantoin (1)
2-octynoic acid (1)
N-(hexadecanoyl)-sphing-4-enine-1-phosphocholine (1)
4-hydroxy-hexanoic acid (1)
Sphinga-4E,14Z-dienine (1)
2,3,4-trihydroxy-butanoic acid (1)
8-keto-7-aminoperlagonic acid (1)

Study type

Transcription profiling by array (1)

Release Date

2024 (36)
2021 (35)
2023 (34)
2020 (33)
2022 (32)
2025 (29)
2018 (21)
2017 (15)
2016 (15)
2015 (14)
2012 (11)
2014 (9)
2019 (8)
2026 (5)
2011 (4)
2013 (3)
2010 (3)
2009 (3)
2007 (3)
2008 (2)

Lab affiliation

Department of Biochemistry & Molecular Biology, New Jersey Medical School of Rutgers University [1] Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai [2] (1)
Department of Biological Sciences, 14 Science Drive 4, National University of Singapore, Singapore 117543 (1)
Department of Medicine, Division of Nephrology, Icahn School of Medicine at Mount Sinai, New York, NY, USA. (1)
Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand (1)
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai (1)
Department of Systems Biology (Physiology). University of Alcala. Spain. (1)
Thomas and Margaret Pyle Chair at the Morgridge Institute for Research Professor, Biomolecular Chemistry and Chemistry University of Wisconsin, Madison Director, NIH National Center for Quantitative Biology of Complex Systems (1)
University of Pavia, Dept. of Molecular Medicine (1)
University of Wisconsin-Madison, Department of Chemistry (1)

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Enterohemorrhagic Escherichia coli biofilms are inhibited by 7-hydroxyindole and stimulated by isatin.

Not available

S-EPMC1932762 | biostudies-literature

Outcomes and clinical practice in patients with COVID-19 admitted to the intensive care unit in Montreal, Canada: a descriptive analysis.

Not available

S-EPMC7721255 | biostudies-literature

Transcription profiling of E.coli biofilms treated with 7-hydroxyindole and isatin

For the microarray experiments, 10 g glass wool (Corning Glass Works, Corning, N.Y.) were used to form biofilms (30) in 250 mL in 1 L Erlenmeyer shake flasks which were inoculated with overnight cultures diluted that were 1:100. For EHEC with 7-hydroxyindole and isatin, 1000 mM 7-hydroxyindole in 2...

ORGANISM(S): Escherichia coli

2008-06-14 | E-GEOD-6195 | biostudies-arrayexpress

Validation of Amazon Halo Movement: a smartphone camera-based assessment of movement health.

Not available

S-EPMC9445016 | biostudies-literature

Phase I study of a novel oral Janus kinase 2 inhibitor, SB1518, in patients with relapsed lymphoma: evidence of clinical and biologic activity in multiple lymphoma subtypes.

Not available

S-EPMC5950499 | biostudies-literature

Spinal cord injury regulates circular RNA expression in axons.

Not available

S-EPMC10483835 | biostudies-literature

Genotype‒phenotype correlation in recessive DNAJB4 myopathy.

Not available

S-EPMC11514740 | biostudies-literature

Feasibility of snapshot testing using wearable sensors to detect cardiorespiratory illness (COVID infection in India).

Not available

S-EPMC11490565 | biostudies-literature

Epidural Thin Film Implants of Polymerized Curcumin Downregulate Inflammatory Markers and Improve Functional Recovery After Spinal Cord Injury in Mice.

Not available

S-EPMC12803040 | biostudies-literature

Comparative proteome analysis across moss, monocots and dicots unveils the evolutionary dynamics of core processes

Comparative functional genomics offers a powerful approach to study species evolution. To date, the majority of these studies have focused on the transcriptome in mammalian and yeast phylogenies. Here we present a novel multi-species proteomic dataset and a computational pipeline to compare the prot...

ORGANISM(S): Physcomitrella patens subsp. patens (Moss) Solanum tuberosum (Potato) Arabidopsis thaliana (Mouse-ear cress) Zea mays (Maize) Medicago truncatula (Barrel medic) (Medicago tribuloides) Oryza sativa (Rice) Pinus taeda

2020-11-04 | PXD013606 | Pride

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332 Results

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