Jenkins J J - OmicsDI

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Unknown (2294)
Proteomics (50)
Transcriptomics (26)
Genomics (20)
Metabolomics (16)

Organisms

Allexis (47)
Arabidopsis thaliana (47)
Callinectes sapidus (47)
Cyanophora paradoxa (47)
Ensifer adhaerens (47)
Entamoeba histolytica (47)
Escherichia coli (47)
Histomonas meleagridis (47)
Leishmania major strain Friedlin (47)
Listeria monocytogenes (47)
Medicago truncatula (47)
Methylohalobius crimeensis 10Ki (47)
Mus musculus (47)
Mycobacterium tuberculosis (47)
Oryza sativa Indica Group (47)
Ostreococcus tauri (47)
Physcomitrium patens (47)
Pseudomonas putida KT2440 (47)
Rattus norvegicus (47)
Saccharomyces cerevisiae (47)
Homo sapiens (26)
Arabidopsis thaliana (6)
Xenopus laevis (3)
Anopheles gambiae (2)
Mus musculus (2)
Hymenochirus boettgeri (1)
Capsella grandiflora (1)
Heterodera schachtii (1)
Triticum aestivum (1)
Sus scrofa (1)

Repository

pride (47)
biostudies-arrayexpress (27)
EGA (18)
MetaboLights (15)
MassIVE (3)
GNPS (1)
ENA (1)

Tissue

Cell culture (5)
Epithelial cell (4)
Blood cell (3)
Fibroblast (3)
B cell (2)
Blood (2)
Blood plasma (2)
HeLa cell (2)
T cell (2)
Bile (1)
Cell suspension culture (1)
Early embryonic cell (1)
Epithelium of rectum (1)
Extracellular vesicle (1)
Hepatocyte (1)
Kidney (1)
Liver (1)
Macrophage (1)
Mammary epithelium (1)
Monocyte (1)
Peripheral blood mononuclear cell (1)
Permanent cell line cell (1)
Plant cell (1)
Primary cell (1)
Prokaryotic cell (1)
Rectum (1)
Rectum smooth muscle tissue (1)
Saliva (1)
Shoot (1)
Synovial tissue (1)

Disease

Chronic lymphocytic leukemia (4)
Breast cancer (3)
Adult respiratory distress syndrome (1)
Drug allergy (1)
Hepatocellular carcinoma (1)
Hypersensitivity reaction type IV disease (1)
Listeriosis (1)
Neurodevelopmental delay (1)
Osteoarthritis (1)
Polycystic Kidney (1)
Rectum cancer (1)
Typhoid fever (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (47)
Shotgun proteomics (29)
Mass spectrometry (14)
Bottom-up proteomics (5)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Gel-based experiment (2)
Top-down proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (2)
TruSeq® Nano (1)
NextSeq 500 (1)
LTQ FT (1)
MaXis (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Orbitrap Fusion ETD (1)
LTQ FT Ultra (Thermo Scientific) (1)
TSQ Vantage (Thermo Scientific) (1)
Liquid Chromatography Tandem MS (LC-MS/MS) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2023 (15)
2016 (11)
2025 (8)
2021 (7)
2020 (7)
2013 (6)
2022 (6)
2018 (5)
2026 (5)
2012 (4)
2010 (4)
2024 (4)
2011 (3)
2014 (2)
2008 (1)
2007 (1)
2015 (1)
2019 (1)
2017 (1)

CHEBI ID

CHEBI:30769 (4)
CHEBI:35038 (3)
CHEBI:15741 (3)
CHEBI:16359 (3)
CHEBI:30915 (3)
CHEBI:28865 (3)
CHEBI:27432 (3)
CHEBI:143745 (2)
CHEBI:182784 (2)
CHEBI:143757 (2)
CHEBI:195271 (2)
CHEBI:139138 (2)
CHEBI:34687 (2)
CHEBI:74340 (2)
CHEBI:173703 (2)
CHEBI:27997 (2)
CHEBI:15846 (2)
CHEBI:15978 (2)
CHEBI:16811 (2)
CHEBI:18257 (2)
CHEBI:16708 (2)
CHEBI:73858 (2)
CHEBI:34494 (2)
CHEBI:64496 (2)
CHEBI:16865 (2)
CHEBI:16235 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:29016 (2)
CHEBI:18012 (2)

Metabolite Name

Tris(2-butoxyethyl) phosphate (3)
Cholic acid (3)
Dibutyl phthalate (DBP) (2)
Lyso-PC(16:0) (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
Succinate (2)
Taurocholic acid (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
Monoolein (2)
Elaidic acid (2)
9(10)-EpOME (2)
Inosine 5-monophosphate (1)
DMSP (dimethylsulfoniopropionate) (1)
D(-)3-phosphoglyceric acid (1)
NCGC00168953-02_C47H76O17_(3beta,5xi,9xi,22beta)-22,24-Dihydroxyolean-12-en-3-yl 6-deoxy-alpha-L-mannopyranosyl-(1->2)-alpha-L-arabinopyranosyl-(1->2)-beta-D-glucopyranosiduronic acid (1)
Sodium taurochenodeoxycholate (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
3beta-Hydroxy-5-cholenoic acid (1)
PG(18:1/0:0) (1)
PE(P-16:0/22:1) (1)
PE(O-18:1/0:0) (1)
PE(18:1/22:0) (1)
PE(18:0/19:1) (1)
PE(16:1/18:0) (1)
PE(17:1/18:0) (1)

First Public Date

2012 (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (8)
DNA-seq (1)

Release Date

2023 (249)
2025 (238)
2024 (234)
2021 (234)
2022 (231)
2019 (169)
2020 (149)
2018 (142)
2016 (103)
2017 (99)
2015 (99)
2014 (83)
2013 (64)
2012 (57)
2011 (50)
2026 (30)
2009 (24)
2010 (21)
2008 (12)
2007 (5)
2005 (5)
2002 (5)
2006 (4)
1999 (3)
1998 (3)
2003 (2)
2001 (2)
1997 (2)
2004 (1)
2000 (1)

Lab affiliation

University of Victoria (8)
The Centre for Translational Pharmacology, Institute of Molecular, Cellular and Systems Biology, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow G12 8QQ, United Kingdom (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Associate Professor, Department of Chemistry Associate Professor, Thomas C. Jenkins Department of Biophysics Associate Professor, Department of Biology (1)
Biological Sciences Dept, Mississippi State University, Mississippi State, 39762 (1)
Bristol Dental School, University of Bristol (1)
CDSS Bioanalytical Facility, LIV-SRF, Dept. Pharmacology & Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
CIR, Queen’s Medical Research Institute, University of Edinburgh (1)
Center for Cancer Research, National Cancer Institute, National Institutes of Health (1)
Centre for Drug Safety Science, Dept Pharmacology and Therapeutics, Institute for Systems, Molecular and Integrative Biology, University of Liverpool (1)
Centre for Drug Safety Science, Dept Pharmacology and Therapeutics, Institute of Systems, Molecular and Integrative Biology, University of Liverpool (1)
DTU Bioengineering (1)
Department of Biotechnology and Bioengineering, Technical University of Denmark (1)
Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, LE1 9HN (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Stanford School of Medicine Stanford University (1)
Division of Intramural Research, NIH (1)
Département de Biologie Cellulaire Université de Genève Sciences III 30, quai Ernest-Ansermet CH - 1211 Genève 4, Switzerland (1)
Département de Biologie Cellulaire, Université de Genève (1)
HSS Research Institute (1)
Head, Department of Biochemistry and Molecular Biology Head, Signalling Network Laboratory Head, Biomedicine Discovery Institute Cancer Program Department of Biochemistry and Molecular Biology Monash University Level 1, Building 77, Clayton Campus 23 Innovation Walk Clayton VIC 3800 Australia (1)
IMCS, University of Glasgow,Glasgow UK (1)
Laboratory of Cell Biology, Center for Cancer Research, National Cancer Institute, NIH (1)
Laboratory of Cell Biology, National Cancer Institute, National Institutes of Health (1)
MRC Centre for Drug Safety Science, Dept Molecular & Clinical Pharmacology (1)
MRC Centre for Drug Safety Science, Dept Molecular & Clinical Pharmacology, University of Liverpool (1)
MRC Centre for Drug Safety Science, Dept Molecular and Clincal Pharmacology, University of Liverpool (1)
MRC Centre for Drug Safety Science, Dept. Molecular & Clinical Pharmacology, Institute for Translational Medicine, University of Liverpool, UK. (1)
Marshall Centre for Infectious Disease Research and Training, School of Biomedical Sciences, The University of Western Australia, Nedlands, Western Australia, 6009, Australia (1)
Mass Spectrometry Research Center Departments of Biochemistry, Chemistry, Pharmacology, Medicine Vanderbilt University Nashville TN, USA (1)
National Cancer Institute, NIH Bethesda, MD 20892 (1)

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J-domain Proteins form Binary Complexes with Hsp90 and Ternary Complexes with Hsp90 and Hsp70.

Not available

S-EPMC10527347 | biostudies-literature

Jenkins-CI, an Open-Source Continuous Integration System, as a Scientific Data and Image-Processing Platform.

Not available

S-EPMC5322829 | biostudies-literature

Enhancement of Tryptic Peptide Signals from Tissue Sections using MALDI IMS Post-ionization (MALDI-2)

Matrix-assisted laser desorption/ionization imaging mass spectrometry (MALDI IMS) allows for highly multiplexed, unlabeled mapping of analytes from tissue sections. However, further work is needed to improve sensitivity and depth of coverage for protein and peptide IMS. Laser-based post-ionization ...

ORGANISM(S): Homo sapiens (Human)

2021-12-30 | PXD023877 | Pride

Fingerprinting diazotroph communities in the Chesapeake Bay by using a DNA macroarray.

Not available

S-EPMC368353 | biostudies-literature

Awareness of breast density and its impact on breast cancer detection and risk.

Not available

S-EPMC4551864 | biostudies-literature

Adolescents and Young Adults With Spina Bifida Transitioning to Adulthood: A Comprehensive Community-Based Needs Assessment.

Not available

S-EPMC8263488 | biostudies-literature

Sex differences in NSAID-induced perturbation of human intestinal barrier function and microbiota.

Not available

S-EPMC6219825 | biostudies-literature

Complete mitochondrial genome and the phylogenetic position of the Jenkins whipray Himantura jenkinsii (Myliobatiformes, Dasyatidae).

Not available

S-EPMC7871659 | biostudies-literature

Metastable Folding of Bacillus subtilis glmS Ribozyme Modulates Turnover by RNase J1.

Not available

S-EPMC12776656 | biostudies-literature

Overexpression of Brassica napus COMT1 in Arabidopsis heightens UV-B-mediated resistance to Plutella xylostella herbivory

UV-B radiation regulates numerous morphogenic, biochemical and physiological responses in plants, and can stimulate some responses typically associated with other abiotic and biotic stimuli, including invertebrate herbivory. Removal of UV-B from the growing environment of various plant species ha...

2023-08-14 | MTBLS8236 | MetaboLights

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2406 Results

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