Jeong S S - OmicsDI

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Unknown (4628)
Transcriptomics (113)
Proteomics (86)
Genomics (30)
Metabolomics (5)
Models (3)
Other (1)

Organisms

Homo sapiens (105)
Mus musculus (45)
Daphnia pulex (9)
Oryza sativa (7)
Gallus gallus (6)
Arabidopsis thaliana (6)
Rattus norvegicus (4)
Saccharomyces cerevisiae (4)
Zea mays (2)
Chlamydomonas priscui (2)
Escherichia coli (2)
Bos taurus (2)
Capra hircus (2)
Ovis aries (2)
Ogataea angusta (1)
Petunia x hybrida (1)
Arachis hypogaea (1)
Streptococcus mutans UA159 (1)
Papio anubis (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Streptomyces coelicolor (1)
Medicago truncatula (1)
Apis mellifera (1)
Staphylococcus aureus (1)
Brachypodium distachyon (1)
Escherichia coli BL21(DE3) (1)
Corynebacterium glutamicum ATCC 13032 (1)
Danio rerio (1)
Halobacterium salinarum NRC-1 (1)
Akkermansia muciniphila ATCC BAA-835 (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (126)
pride (69)
EGA (15)
MassIVE (10)
jPOST (4)
BioModels (3)
MetaboLights (3)
GNPS (2)
geo (1)
GPMDB (1)
PanoramaPublic (1)
PAXDB (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (19)
Epithelial cell (6)
Fibroblast (6)
Heart (4)
Dental plaque (3)
Liver (3)
Stem cell (3)
Urine (3)
Blood plasma (2)
Brain (2)
Kidney (2)
Permanent cell line cell (2)
Adipose tissue (1)
Anterior chamber of the eye (1)
Blood cell (1)
Cell line cell (1)
Gingival fluid (1)
Glomerular endothelial cell (1)
Hepatic stellate cell (1)
Mammary epithelium (1)
Milk (1)
Primary cell (1)
Primary motor neuron (1)
Proximal tubular epithelium (1)
Retina (1)
Skin (1)
Smooth muscle cell of bladder (1)

Disease

Breast cancer (4)
Chronic kidney disease (3)
Not Available (1)
Acute leukemia (1)
Alzheimer's disease (1)
Brain glioblastoma multiforme (1)
Cardiovascular system disease (1)
Cataract (1)
Cervix carcinoma (1)
Exfoliation syndrome (1)
Gingivitis (1)
Malignant neoplasm of ovary (1)
Muscular dystrophy (1)
Ogden syndrome (1)
Periodontitis (1)
Primary open angle glaucoma (1)
Progeria (1)
Pulmonary hypertension (1)
Spinal muscular atrophy (1)
Systemic lupus erythematosus (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (69)
Shotgun proteomics (39)
Bottom-up proteomics (12)
Gel-based experiment (7)
Affinity purification coupled with mass spectrometry proteomics (6)
Data-dependent acquisition (6)
Top-down proteomics (4)
SWATH MS (3)
Mass spectrometry (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)

Instrument Platform

Illumina HiSeq 2000 (3)
LTQ Orbitrap (3)
LTQ XL (2)
Orbitrap Fusion (2)
Q Exactive (2)
Liquid Chromatography MS - negative - hilic (2)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
Illumina MiSeq (1)
NextSeq 550 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Xevo G2 Q-Tof (1)
Instrument (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
Q Exactive Plus (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Pagasus 4D GC-MS (LECO) (1)
Unknown (1)

Publication Date

2014 (26)
2011 (26)
2024 (15)
2010 (15)
2015 (14)
2025 (13)
2013 (12)
2012 (12)
2023 (11)
2021 (10)
2022 (10)
2020 (9)
2026 (8)
2009 (7)
2019 (7)
2016 (6)
2008 (5)
2017 (4)
2007 (4)
2018 (3)
2006 (1)

UNIPROT ID/AC

A0A078BWL0_BRANA (1)
A0A078C354_BRANA (1)
A0A078C5F6_BRANA (1)
A0A078CAM5_BRANA (1)
A0A078CAS9_BRANA (1)
A0A078CBC4_BRANA (1)
A0A078CG85_BRANA (1)
A0A078CI72_BRANA (1)
A0A078CJJ5_BRANA (1)
A0A078CJY2_BRANA (1)
A0A078CUQ3_BRANA (1)
A0A078CX39_BRANA (1)
A0A078CXF9_BRANA (1)
A0A078D4W1_BRANA (1)
A0A078D7G6_BRANA (1)
A0A078D911_BRANA (1)
A0A078DAQ0_BRANA (1)
A0A078DBS4_BRANA (1)
A0A078DES1_BRANA (1)
A0A078DFR1_BRANA (1)
A0A078DGP8_BRANA (1)
A0A078DIZ0_BRANA (1)
A0A078DMP0_BRANA (1)
A0A078DNQ5_BRANA (1)
A0A078DQX4_BRANA (1)
A0A078DRK7_BRANA (1)
A0A078E950_BRANA (1)
A0A078EBD9_BRANA (1)
A0A078ECX4_BRANA (1)
A0A078EDI6_BRANA (1)

CHEBI ID

CHEBI:15756 (3)
CHEBI:16335 (3)
CHEBI:17553 (3)
CHEBI:22470 (3)
CHEBI:14314 (2)
CHEBI:14336 (2)
CHEBI:15354 (2)
CHEBI:15356 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)
CHEBI:15676 (2)
CHEBI:15698 (2)
CHEBI:15710 (2)
CHEBI:15727 (2)
CHEBI:15741 (2)
CHEBI:15824 (2)
CHEBI:15891 (2)
CHEBI:15908 (2)
CHEBI:15971 (2)
CHEBI:16015 (2)
CHEBI:16020 (2)
CHEBI:16027 (2)
CHEBI:16040 (2)
CHEBI:16113 (2)
CHEBI:16196 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16359 (2)
CHEBI:16393 (2)
CHEBI:16410 (2)

Metabolite Name

1-Palmitoylglycerol (2)
3-phosphoglycerate (2)
Glycerol (2)
L-Pyroglutamic acid (2)
Malate (2)
(-)-Riboflavin (1)
(3-Carboxypropyl)trimethylammonium cation (1)
(4Z,7Z,10Z,13Z,16Z,19Z)-4,7,10,13,1 6,19-Docosahexaenoic acid (1)
(R)-2-hydroxyglutarate (1)
(R)-3-Hydroxybutyric acid (1)
1,2-dioleoyl-sn-glycero-3-phosphatidylcholine (1)
1,3,5-Benzenetriol (1)
1-Aminocyclopropanecarboxylic acid (1)
1-Hexadecanol (1)
1-Methyladenosine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Oleoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
1-Palmitoyl-sn-glycero-3-phosphocholine (1)
1-Salicylate glucuronide (1)
1-Stearoyl-2-arachidonoyl-sn-glycerol (1)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
1-Stearoyl-2-oleoyl-sn-glycerol 3-phosphocholine (SOPC) (1)
1-Stearoyl-rac-glycerol (1)
1-Stearoyl-sn-glycerol 3-phosphocholine (1)
1-arachidonoyl-GPI (20:4)* (1)
1-docosahexaenoyl-GPE (22:6)* (1)
1-linoleoyl-GPI (18:2)* (1)
1-oleoyl-GPI (18:1) (1)

First Public Date

2014 (1)

Modelling Approach

Constraint-based model (2)
Boolean model (1)

Lab affiliation

Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (3)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (3)
Chemistry Department, University of Minnesota, United States (2)
Daegu Catholic University School of Medicine (2)
Department of Archaeology, University of York, Heslington, YO10 5DD, United Kingdom (2)
1Disease Target Structure Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Republic of Korea (1)
Asan Medical Center, Clinical Proteomics Core, Republic of Korea (1)
Associate Professor (1)
Basilbiotech, Incheon 22002, Republic of Korea. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
Center for RNA Research, Institute for Basic Science, Seoul 08826, Korea School of Biological Sciences, Seoul National University, Seoul 08826, Korea (1)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
College of Pharmacy, Gachon University, 534-2 Yeonsu 3-dong, Yeonsu-gu, Incheon 406-799, Republic of Korea (1)
College of Pharmacy, Research Institute of Pharmaceutical Sciences, Kyungpook National University (1)
Convergence Medicine Research Center, Bio-Medical Institute of Technology, Asan Institution for Life Science, Asan Medical Center, Department of Biomedical Sciences, University of Ulsan, College of Medicine 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Korea (1)
Dana-Farber Cancer Institute (1)
Departmemt of Digital Medicine, University of Ulsan, College of Medicine, Asan Medical Center, South Korea (1)
Department of Biochemistry, The University of Utah, Salt Lake City, UT, USA Howard Hughes Medical Institute, University of Utah, Salt Lake City, UT, USA (1)
Department of Biological Sciences, College of Natural Science, Pusan National University, Pusan, 46241, Republic of Korea (1)
Department of Biological Sciences, KAIST (1)
Department of Biomedical Science and Technology, Kyung Hee Medical Science Research Institute, Kyung Hee University, Seoul, South Korea (1)
Department of Biotechnology, College of Life Science and Biotechnology, Korea University, Seoul, Republic of Korea (1)
Department of Biotechnology, Yonsei University, Republic of Korea (1)
Department of Cell Biology, Harvard Medical School, Boston, MA, USA (1)
Department of Chemistry, Korea University, Seoul 02841, Republic of Korea (1)
Department of Life Science, College of Natural Sciences, Ajou University, 206, Worldcup-ro, Yeongtong-gu, Suwon, Gyeoggi-do 16499, Korea (1)
Department of Medical Device Management and Research, SAIHST, Sungkyunkwan University, Seoul 06355, Korea (1)
Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390 (1)
Department of Molecular Medicine and Biopharmaceutical Sciences, Graduate School of Convergence Science and Technology and College of Medicine or College of Pharmacy, Seoul National University, Republic of Korea. (1)
Department of Molecular Medicine, CMRI, Exosome Convergence Research Center (ECRC), School of Medicine, Kyungpook National University, Daegu, Republic of Korea. (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

Modification

2x(15)N labeled L-lysine (1)
4 (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (73)
RNA-seq of non coding RNA (11)
ChIP-seq (9)
RNA-seq of coding RNA (9)
Transcription profiling by tiling array (7)
Methylation profiling by array (5)
Methylation profiling by high throughput sequencing (5)
Unknown experiment type (3)
Transcription profiling by MPSS (1)
High-throughput sequencing (1)
Comparative genomic hybridization by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (636)
2023 (558)
2024 (550)
2022 (550)
2021 (498)
2020 (357)
2019 (303)
2018 (240)
2017 (216)
2016 (171)
2015 (155)
2026 (137)
2014 (101)
2011 (62)
2013 (60)
2012 (51)
2010 (48)
2009 (24)
2008 (16)
2007 (8)
2006 (6)
2005 (2)
2003 (2)
2000 (2)
2001 (1)

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The response of Chlamydomonas reinhardtii to nitrogen deprivation: a systems biology analysis

Drastic alteration in macronutrients causes large changes in gene expression in the photosynthetic unicellular alga Chlamydomonas reinhardtii. Preliminary data suggested that cells follow a biphasic response to this change hinging on the initiation of lipid accumulation, and we hypothesized that ...

2015-06-29 | MTBLS208 | MetaboLights

The comparisons of expression pattern reveal molecular regulation of fruit metabolites in S. nigrum and S. lycopersicum.

Not available

S-EPMC8943121 | biostudies-literature

Expression data from Staphylococcus aureus ATCC 25923 (antibiotic sensitive) and ATCC 33591 (MRSA)

S. aureus ATCC 25923 is performance standard for antimicrobial susceptibility testing. S. aureus ATCC 33591 showed resistance against erytrhromycin, penicillin, and streptomycin. We used microarray to compare RNA expression between sensitive and resistant strain of S. aureus as a preliminary researc...

ORGANISM(S): Staphylococcus aureus

2010-09-15 | E-GEOD-18289 | biostudies-arrayexpress

Dichlorido{2,6-diisopropyl-N-[(S)-pyrrolidin-2-ylmeth-yl]aniline-κ(2) N,N'}palladium(II).

Not available

S-EPMC3647791 | biostudies-literature

SERBP1 affects homologous recombination-mediated DNA repair by regulation of CtIP translation during S phase.

Not available

S-EPMC4513868 | biostudies-literature

Tuning the Structure of Poly(aspartic acid)s' Self-Assemblies to Enhance Cellular Uptake.

Not available

S-EPMC12431294 | biostudies-literature

Molybdenum Carbide Anchored on N,S Co-Doped Carbon Composite Derived from Lignosulfonate as a High Performance Electrocatalyst for Hydrogen Evolution Reaction