Ji J J - OmicsDI

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Unknown (17154)
Proteomics (402)
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Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
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UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
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B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

ENSEMBL ID

ENSG00000170477 (17)
ENSG00000147251 (4)
ENSG00000247315 (3)
ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:104012 (13)
CHEBI:104362 (13)
CHEBI:104873 (13)
CHEBI:10727 (13)
CHEBI:1109 (13)
CHEBI:11230 (13)
CHEBI:11561 (13)
CHEBI:11596 (13)
CHEBI:11812 (13)
CHEBI:11814 (13)
CHEBI:11851 (13)
CHEBI:12071 (13)
CHEBI:12427 (13)
CHEBI:128769 (13)
CHEBI:12936 (13)
CHEBI:12952 (13)
CHEBI:132146 (13)
CHEBI:132511 (13)
CHEBI:132515 (13)
CHEBI:132537 (13)
CHEBI:132957 (13)
CHEBI:134127 (13)
CHEBI:134128 (13)
CHEBI:134129 (13)
CHEBI:134130 (13)
CHEBI:134541 (13)
CHEBI:134592 (13)
CHEBI:134594 (13)
CHEBI:134637 (13)
CHEBI:136147 (13)

Metabolite Name

Lysine (8)
Glycine (7)
Isoleucine (7)
Phenylalanine (7)
Tyrosine (7)
Valine (7)
Alanine (6)
Choline (6)
Glucose (6)
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Threonine (6)
Betaine (5)
Creatine (5)
Creatine (5)
Fumaric acid (5)
Glutamate (5)
Glycine (5)
Inosine (5)
L-Phenylalanine (5)
L-Tyrosine (5)
Lactic acid (5)
Leucine (5)
Methionine (5)
Proline (5)
Serine (5)
Succinic acid (5)
Uracil (5)
Xylitol (5)
5-Hydroxyindoleacetic acid (4)

First Public Date

2023 (2)
2017 (2)
2014 (2)
2022 (1)
2020 (1)
2019 (1)
2011 (1)

Modelling Approach

Constraint-based model (13)
Ordinary differential equation model (3)

Lab affiliation

Proteomics - Bioinformatics (5)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (3)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. (2)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Madrid, Spain (2)
Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (2)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Instituto de Biotecnología y Biología Molecular (IBBM-CONICET). La Plata, Buenos Aires, Argentina. (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Nanjing Medical University (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
SIMM (2)
Shandong University (2)
Shanghai Jiao Tong University (2)
University of Edinburgh (2)
Waters Corporation (2)
Yonsei university (2)

IsPrivate

False (16)

Submitter Keywords

FROG (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (149)
ChIP-seq (48)
RNA-seq of coding RNA (36)
Comparative genomic hybridization by array (14)
Methylation profiling by array (13)
Unknown experiment type (11)
RNA-seq of non coding RNA (8)
ChIP-chip by array (4)
ATAC-seq (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (3)
ChIP-chip by tiling array (2)
MicroRNA profiling by array (2)
Transcription profiling by MPSS (1)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
Animal - One-color microarray (1)
Trajectory (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by high throughput sequencing (1)
DNA-seq (1)

Release Date

2025 (2357)
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The In Vivo Pattern of Binding of RAG1 and RAG2 to Antigen Receptor Loci

The critical initial step in V(D)J recombination, binding of RAG1 and RAG2 to recombination signal sequences flanking antigen receptor V, D, and J gene segments, has not previously been characterized in vivo. Here we demonstrate that RAG protein binding occurs in a highly focal manner to a small reg...

ORGANISM(S): Mus musculus

2010-04-19 | E-GEOD-21207 | biostudies-arrayexpress

The histone methyltransferase Setd2 is indispensable for V(D)J recombination.

Not available

S-EPMC6659703 | biostudies-literature

FOXK2 ChIP-seq

Chromatin immunoprecipitation of FOXK2 (tagged with Flag and His tags) in U2OS cells detected by SOLiD sequencing. ***Correction March 2014: The sample “FOXK2_Dox_treated” has been renamed, it was originally named “FOXK2_rep2”. A new sample “FOXK2_rep2” has been added, with new files. It has come to...

ORGANISM(S): Homo sapiens

2011-01-20 | E-MTAB-565 | biostudies-arrayexpress

CD5L associates with IgM via the J chain.

Not available

S-EPMC11437284 | biostudies-literature

Facile enzymatic synthesis of base J-containing oligodeoxyribonucleotides and an analysis of the impact of base J on DNA replication in cells.

Not available

S-EPMC4111573 | biostudies-literature

Diversity of Avian leukosis virus subgroup J in local chickens, Jiangxi, China.

Not available

S-EPMC7910287 | biostudies-literature

Structural insights into RNase J that plays an essential role in Mycobacterium tuberculosis RNA metabolism.