Ji Liang L - OmicsDI

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Unknown (730)
Transcriptomics (320)
Genomics (62)
Proteomics (23)
Metabolomics (6)
Multiomics (1)
Other (1)

Organisms

Homo sapiens (227)
Mus musculus (97)
Caenorhabditis elegans (28)
Arabidopsis thaliana (6)
Bacteroides thetaiotaomicron (4)
Rattus norvegicus (4)
Macaca mulatta (3)
Gallus gallus (3)
Methanobrevibacter smithii ATCC 35061 (2)
Bifidobacterium longum (2)
Oryza sativa Japonica Group (2)
Sus scrofa (2)
Heligmosomoides polygyrus (1)
Oreochromis niloticus (1)
Antirrhinum majus (1)
Litomosoides sigmodontis (1)
Methanobrevibacter smithii (1)
Bacteria (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Ambystoma mexicanum (1)
Equus caballus (1)
Actinobacillus pleuropneumoniae (1)
Streptomyces coelicolor (1)
Porphyromonas gingivalis (1)
Apis mellifera (1)
Zea mays (1)
Staphylococcus aureus (1)
Oncorhynchus mykiss (1)
Bos taurus (1)
Canis lupus familiaris (1)

Repository

biostudies-arrayexpress (383)
iProX (12)
pride (11)
MetaboLights (6)
EGA (1)
MassIVE (1)

Tissue

Cell culture (3)
Liver (3)
Epithelial cell (2)
Blood plasma (1)
T cell (1)

Disease

Dermal neurofibroma (1)
Normal (1)
Breast cancer (1)

Technology Type

Mass Spectrometry (11)
Mass spectrometry (5)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Shotgun proteomics (2)
Top-down proteomics (2)
Mass spectrometry assay (1)
HDMSE (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (5)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 2000 (4)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina HiSeq 4000 (2)
Fluidigm C1 (1)
Gene Titan Instrument system (1)
Affymetrix GeneChip WT Labeling Kit (1)
NanoDrop ND-1000A spectrophotometer. Agilent Bioanalyzer 2100 (1)
Linux computer (1)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (1)
Illumina Genome Analyzer IIx (1)
NA (1)
MinION (1)
Q Exactive (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2011 (68)
2010 (56)
2012 (49)
2015 (40)
2013 (40)
2014 (34)
2009 (25)
2016 (22)
2008 (20)
2024 (9)
2022 (9)
2018 (7)
2026 (6)
2007 (6)
2025 (6)
2021 (4)
2019 (3)
2005 (3)
2020 (2)
2017 (2)
2023 (2)

CHEBI ID

CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:15355 (2)
CHEBI:15756 (2)
CHEBI:15887 (2)
CHEBI:16040 (2)
CHEBI:16196 (2)
CHEBI:16335 (2)
CHEBI:16359 (2)
CHEBI:166934 (2)
CHEBI:16811 (2)
CHEBI:16870 (2)
CHEBI:16919 (2)
CHEBI:17368 (2)
CHEBI:17553 (2)
CHEBI:17895 (2)
CHEBI:17981 (2)
CHEBI:18012 (2)
CHEBI:18160 (2)
CHEBI:18183 (2)
CHEBI:18186 (2)
CHEBI:18257 (2)
CHEBI:22660 (2)
CHEBI:27266 (2)
CHEBI:27637 (2)
CHEBI:28189 (2)
CHEBI:28621 (2)
CHEBI:28790 (2)
CHEBI:28842 (2)
CHEBI:28867 (2)

Metabolite Name

4-Pyridoxic acid (2)
Acetylcholine (2)
Adenine (2)
Cholic acid (2)
Citric acid (2)
Fumaric acid (2)
L-Malic acid (2)
L-Phenylalanine (2)
Maleic acid (2)
Methylmalonic acid (2)
Neohesperidin (2)
Pelargonic acid (2)
Pyroglutamic acid (2)
Salicylic acid (2)
Threonic acid (2)
(+/-)-Taxifolin (1)
(-)-Epigallocatechin (1)
(-)-pinellic acid (1)
(.+/-.)-Tartaric acid (1)
(1S,3R,5Z,7E,22E)-9,10-Secoergosta-5,7,10,22-tetraene-1,3,25,28-tetrol (1)
(20Z)-17-Oxo-20-hexacosenoic acid (1)
(2R)-2-Hydroxy-3-(phosphonatooxy)propanoate (1)
(2R,3S)-2-hydroxy-3-isopropylbutanedioic acid (1)
(2S)-1-Hydroxy-3-(pentadecanoyloxy)-2-propanyl (9Z)-9-hexadecenoate (1)
(2S)-3-Hydroxy-2-(octanoyloxy)propyl decanoate (1)
(2xi)-D-gluco-heptonic acid (1)
(3beta,5xi,9xi)-Urs-12-en-3-yl palmitate (1)
(3r,4s)-Tofacitinib (1)
(5xi)-11,12-Dihydroxyabieta-8(14),9(11),12-trien-20-oic acid (1)
(E)-Glutaconate (1)

Study type

Transcription profiling by array (204)
RNA-seq of coding RNA (50)
ChIP-seq (49)
Comparative genomic hybridization by array (12)
Unknown experiment type (11)
Methylation profiling by array (10)
Methylation profiling by high throughput sequencing (10)
Other (7)
RNA-seq of non coding RNA (7)
ChIP-chip by tiling array (5)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by high throughput sequencing (2)
Transcription profiling by SAGE (2)
Genotyping by array (2)
DNA-seq (2)
Animal - One-color microarray (1)
Cell line - High-throughput sequencing (1)
Hi-C (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2025 (118)
2022 (87)
2023 (79)
2024 (75)
2011 (71)
2021 (69)
2015 (67)
2018 (66)
2020 (61)
2010 (61)
2012 (57)
2016 (49)
2014 (49)
2013 (48)
2017 (40)
2019 (29)
2026 (28)
2009 (26)
2008 (21)
2007 (8)
2005 (4)

Lab affiliation

1 Department of Hepatobiliary Surgery, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, Anhui, 230001, China. 2 Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. 3 Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Multidisciplinary Sciences, Goettingen, Germany (1)
Center for Synthetic Microbiology & Department of Chemistry, Marburg University,Hans-Meerwein-Straße 4, 35043 Marburg, Germany (1)
Department of General Surgery, Key Laboratory of Hepatosplenic Surgery, Ministry of Education, The First Affiliated Hospital of Harbin Medical University, Harbin 150001, China. Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Hefei, Anhui, 230001, China. Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, Hefei, Anhui, 230001, China. (1)
Department of Hepatobiliary Surgery, Anhui Province Key Laboratory of Hepatopancreatobiliary Surgery, Anhui Provincial Clinical Research Center for Hepatobiliary Diseases, The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei 230001, China. (1)
Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University (1)
Instituto Carlos Chagas, Fundação Oswaldo Cruz (Fiocruz), Curitiba, Brazil, (1)
Munich Cluster for Systems Neurology (SyNergy), Faculty of Medicine, Ludwig-Maximilians University München, Munich, Germany (1)
Peking University (1)
The First Affiliated Hospital of USTC, Division of Life Sciences and Medicine, University of Science and Technology of China; The First Affiliated Hospital of Harbin Medical University (1)
University of Science and Technology of China (1)

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Du-Huo-Ji-Sheng-Tang Attenuates Inflammation of TNF-Tg Mice Related to Promoting Lymphatic Drainage Function.

Not available

S-EPMC4863122 | biostudies-literature

Dynamic changes of DNA methylome and hydroxymethylome during neural differentiation of hES cell (hMeDIP-Seq and MBD-Seq)

DNA methylation and hydroxymethylation have been implicated in normal development and differentiation, but our knowledge about the genome-wide distribution of 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) during cellular differentiation remains limited. Using in vitro model system of gra...

ORGANISM(S): Homo sapiens

2013-11-04 | E-GEOD-38214 | biostudies-arrayexpress

Arginine depletion-induced autophagy and metabolic dysregulation are involved in the disease severity of hand, foot, and mouth disease

Amino acid metabolism provides significant insight into the development and prevention of many viral diseases. Therefore, the present study aimed to compare the amino acid profiles of hand, foot, and mouth disease (HFMD) patients with those of healthy individuals and to further reveal the molecular ...

2024-10-25 | MTBLS11341 | MetaboLights

Dynamic changes of DNA methylome and hydroxymethylome during neural differentiation of hES cells (Methylation BeadChip)

ORGANISM(S): Homo sapiens

2013-11-04 | E-GEOD-38216 | biostudies-arrayexpress

Stop-Flow Lithography for the Continuous Production of Degradable Hydrogel Achiral Crescent Microswimmers.

Not available

S-EPMC9144168 | biostudies-literature

B.thetaiotaomicron mono-association versus B. thetaiotaomicron co-colonization with B. animalis or L. casei, PR chow, B6

Genome wide transcriptional comparison of B. thetaiotaomicron mono-association vs. B. thetaiotaomicron bi-association with B.animalis or L. casei. Cecal populations from 20d colonizations with B6 gnotobiotic mice fed a standard-chow polysaccharide rich (PR) diet (n=5 samples/group) were profiled. T...

ORGANISM(S): Bacteroides thetaiotaomicron

2010-07-01 | E-GEOD-5867 | biostudies-arrayexpress

IL4I1 Is a Novel Regulator of M2 Macrophage Polarization That Can Inhibit T Cell Activation via L-Tryptophan and Arginine Depletion and IL-10 Production.

Not available

S-EPMC4658051 | biostudies-literature

Transcriptome sequencing and network pharmacology-based approach to reveal the effect and mechanism of Ji Chuan Jian against Parkinson's disease.

Not available

S-EPMC10239169 | biostudies-literature

Dynamic changes of DNA methylome and hydroxymethylome during neural differentiation of hES cells

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Homo sapiens

2013-11-04 | E-GEOD-38217 | biostudies-arrayexpress

Repurposing the orphan drug nitisinone to control the transmission of African trypanosomiasis

Tsetse transmit African trypanosomiasis, which is a disease fatal to both humans and animals. A vaccine to protect against this disease does not exist so transmission control relies on eliminating tsetse populations. Although neurotoxic insecticides are the gold standard for insect control, they neg...

2021-10-06 | MTBLS2166 | MetaboLights

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1144 Results

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