Ji Z Z - OmicsDI

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Unknown (8872)
Proteomics (301)
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Organisms

Homo sapiens (203)
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Caenorhabditis elegans (23)
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Bradyrhizobium diazoefficiens USDA 110 (2)
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Halobacterium salinarum NRC-1 (1)

Repository

pride (230)
biostudies-arrayexpress (118)
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Tissue

Cell culture (62)
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Myelodysplastic syndrome (1)

Technology Type

Mass Spectrometry (232)
Shotgun proteomics (111)
Bottom-up proteomics (52)
Mass spectrometry (50)
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Affinity purification coupled with mass spectrometry proteomics (25)
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SWATH MS (9)
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SRM/MRM (6)
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HDMSE (3)
Proteogenomics (3)
NMR spectroscopy (2)
ESI (2)
Affymetrix 6.0 (1)
NMR spectroscopy assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Immunopeptidomics (1)
MSE (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (26)
Liquid Chromatography MS - negative - reverse phase (24)
Liquid Chromatography MS - negative - reverse-phase (6)
Liquid Chromatography MS - alternating - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Liquid Chromatography MS - positive - reverse-phase (5)
Liquid Chromatography MS - negative - hilic (4)
Illumina HiSeq 2500 (3)
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Q Exactive (3)
Illumina Genome Analyzer IIx (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
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Bruker (2)
GCMS-QP2010 Plus (Shimadzu) (2)
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Gas Chromatography MS - positive (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
GenePix 4200A (1)
Trimmomatic 0.32; Bowtie 2.2.3 (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
LTQ Orbitrap Velos (1)
MS:1000044 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive Plus (1)

Publication Date

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2011 (43)
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2020 (24)
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2013 (11)
2016 (10)
2012 (6)
2009 (4)
2008 (4)
2006 (4)
2005 (2)
2007 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
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A9CPA7_SOYBN (2)
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B0M195_SOYBN (2)
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B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

CHEBI ID

CHEBI:17368 (19)
CHEBI:15428 (16)
CHEBI:15756 (16)
CHEBI:30769 (16)
CHEBI:15891 (15)
CHEBI:16919 (15)
CHEBI:17895 (15)
CHEBI:28044 (15)
CHEBI:15354 (14)
CHEBI:17295 (14)
CHEBI:17596 (14)
CHEBI:15741 (13)
CHEBI:16335 (13)
CHEBI:17568 (13)
CHEBI:18186 (13)
CHEBI:27897 (13)
CHEBI:16040 (12)
CHEBI:16235 (12)
CHEBI:17154 (12)
CHEBI:17821 (12)
CHEBI:18012 (12)
CHEBI:27266 (12)
CHEBI:28842 (12)
CHEBI:16027 (11)
CHEBI:16704 (11)
CHEBI:16708 (11)
CHEBI:16750 (11)
CHEBI:16811 (11)
CHEBI:17203 (11)
CHEBI:17351 (11)

Metabolite Name

Creatine (10)
Hypoxanthine (9)
Betaine (8)
Choline (8)
Inosine (8)
Citric acid (7)
Guanine (7)
L-Phenylalanine (7)
L-Tyrosine (7)
Lysine (7)
5-Hydroxyindoleacetic acid (6)
Glycine (6)
Isoleucine (6)
Kynurenic acid (6)
L-Arginine (6)
L-Isoleucine (6)
Phenylalanine (6)
Tyrosine (6)
Valine (6)
Xanthosine (6)
3-Methylxanthine (5)
4-Pyridoxic acid (5)
Adenine (5)
Creatinine (5)
Erucic acid (5)
Fumaric acid (5)
Glycine (5)
Guanosine (5)
Hexadecanedioic acid (5)
Hydroxyphenyllactic acid (5)

IsPrivate

False (1)

Submitter Keywords

Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)

First Public Date

2011 (1)

Modelling Approach

Machine learning (1)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (50)
ChIP-seq (34)
RNA-seq of coding RNA (13)
Methylation profiling by array (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
ATAC-seq (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Other (1)
DNA-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (1426)
2022 (1259)
2024 (1080)
2023 (1075)
2021 (937)
2020 (661)
2019 (459)
2018 (411)
2017 (328)
2016 (271)
2015 (244)
2026 (206)
2014 (180)
2013 (118)
2011 (108)
2012 (85)
2010 (53)
2009 (29)
2008 (27)
2006 (9)
2007 (7)
2005 (7)
2003 (5)
2004 (1)
2002 (1)
2000 (1)
1999 (1)
1998 (1)

Lab affiliation

Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (4)
Department of Orthopedic Surgery, Sir Run Run Shaw Hospital, Medical College of Zhejiang University, Hangzhou City, China. (3)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (3)
Medical Basic Research Innovation Center for Cardiovascular and Cerebrovascular Diseases, Ministry of Education, Nanjing Medical University, Nanjing, Jiangsu, China (3)
Nanjing Medical University (3)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (3)
Shanghai Institute of Hematology, State Key Laboratory of Medical Genomics, Collaborative Innovation Center of Hematology, National Research Center for Translational Medicine at Shanghai, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200000, China (3)
BMI, Faculty of Medicine, University of Ottawa, Canada (2)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Madrid, Spain (2)
Department of Cardiology, Renmin Hospital of Wuhan University, Wuhan 430060, China (2)
Department of Laboratory Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai, China. (2)
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany. (2)
Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (2)
Instituto de Biotecnología y Biología Molecular (IBBM-CONICET). La Plata, Buenos Aires, Argentina. (2)
Molecular Biology and the Lewis-Sigler Institute for Integrative Genomics, Princeton University, USA (2)
Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (2)
SIMM (2)
Shanghai Jiao Tong University (2)
University of Edinburgh (2)
chemistry biochemistry UCSD (2)
+8617812007228 (1)
, Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (lab head) (1)
., Department of Laboratory Medicine, Medical University of Vienna, 18-20 Währinger Gürtel, 1090 Vienna, Austria (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1Department of Pathophysiology, Key Laboratory of Cell Differentiation and Apoptosis of Chinese Ministry of Education, Shanghai Jiao Tong University School of Medicine (SJTU-SM), Shanghai 200025, China. 2Institute of Health Sciences, Shanghai Institutes for Biological Sciences of Chinese Academy of Sciences and SJTU-SM, Shanghai 200025, China. (1)
1Department of Pharmacology,Feinberg School of Medicine,Northwestern University, Chicago 2Department of Biomedical Engineering, McCormick School of Engineering, Northwestern University,Northwestern University, Evanston (1)
1Division of Hematology/Oncology, Boston Children’s Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute (DFCI), Harvard Stem Cell Institute, Harvard Medical School, Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
1State Key Laboratory of Biotherapy, West China Second University Hospital, Sichuan University;China (1)
Basic Research Lab for “Epigenetic Regeneration of Aged Skeleto-Muscular System (ERASMUS)”, Department of Molecular Genetics and Dental Pharmacology, School of Dentistry, Dental Research Institute, Seoul National University, Seoul, South Korea (1)
Baylor College of Medicine, Houston, TX, 77054 (1)

Tags

xref:ArrayExpress:E-MTAB-565 (1)

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FOXK2 ChIP-seq

Chromatin immunoprecipitation of FOXK2 (tagged with Flag and His tags) in U2OS cells detected by SOLiD sequencing. ***Correction March 2014: The sample “FOXK2_Dox_treated” has been renamed, it was originally named “FOXK2_rep2”. A new sample “FOXK2_rep2” has been added, with new files. It has come to...

ORGANISM(S): Homo sapiens

2011-01-20 | E-MTAB-565 | biostudies-arrayexpress

Structural basis for recognition and regulation of arenavirus polymerase L by Z protein.

Not available

S-EPMC8257661 | biostudies-literature

Pediatric Bone Mineral Accrual Z-Score Calculation Equations and Their Application in Childhood Disease.

Not available

S-EPMC7794655 | biostudies-literature

Quantitative time-course profiling of Plasmodium falciparum transcripts and proteins throughout the 48-hour intraerythrocytic developmental cycle

Quantitative studies of the P. falciparum transcriptome have shown that the tightly controlled progression of the parasite through the intraerythrocytic developmental cycle (IDC) is accompanied by a continuous gene expression cascade where most expressed genes exhibit a single transcriptional peak. ...

ORGANISM(S): Plasmodium falciparum

2011-06-07 | E-GEOD-24416 | biostudies-arrayexpress

Is It Time to Change Our Reference Curve for Femur Length? Using the Z-Score to Select the Best Chart in a Chinese Population.

Not available

S-EPMC4961440 | biostudies-literature

Improving standardization and accuracy of in vivo omega plot exchange parameter determination using rotating-frame model-based fitting of quasi-steady-state Z-spectra.

Not available

S-EPMC11518644 | biostudies-literature

FOXK2 ChIP-seq Illumina

Chromatin immunoprecipitation of FOXK2 (tagged with Flag and His tags) in U2OS cells detected by Illumina sequencing

ORGANISM(S): Homo sapiens

2014-07-23 | E-MTAB-2204 | biostudies-arrayexpress