Jin R R - OmicsDI

Show results for

Unknown (9199)
Transcriptomics (353)
Proteomics (219)
Genomics (105)
Metabolomics (77)
Multiomics (6)
Models (5)
Other (2)

Organisms

Homo sapiens (331)
Mus musculus (131)
Rattus norvegicus (27)
Arabidopsis thaliana (26)
Oryza sativa (14)
Saccharomyces cerevisiae (13)
Escherichia coli (11)
Drosophila melanogaster (9)
Macaca mulatta (4)
Streptococcus pyogenes (4)
Sus scrofa (4)
Populus simonii (3)
Zea mays (3)
Glycine max (3)
Caenorhabditis elegans (3)
Camponotus floridanus (2)
Brassica napus (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Gossypium hirsutum (2)
Alphainfluenzavirus (1)
Severe acute respiratory syndrome-related coronavirus (1)
Amycolatopsis mediterranei U32 (1)
Acromyrmex echinatior (1)
Hevea brasiliensis (1)
Brassica oleracea (1)
Harpegnathos saltator (1)
Schistosoma japonicum (1)
Shigella flexneri (1)
Escherichia coli O157:H7 str. EDL933 (1)
Yersinia pseudotuberculosis (1)

Organisms

Mus musculus (2)
Streptococcus pyogenes (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (393)
pride (123)
MetaboLights (76)
EGA (61)
iProX (45)
MassIVE (30)
jPOST (9)
PeptideAtlas (8)
ENA (6)
BioModels (5)
GPMDB (2)
PAXDB (2)
GNPS (1)
PanoramaPublic (1)

Tissue

Cell culture (44)
Blood plasma (8)
Blood (7)
Brain (6)
Permanent cell line cell (6)
Epithelial cell (5)
Heart (5)
Others (4)
Lung (4)
Blood cell (3)
Blood serum (3)
T cell (3)
Whole body (3)
Male Reproductive System (2)
Bone marrow (2)
Bronchial smooth muscle cell (2)
Cerebrospinal fluid (2)
Fibroblast (2)
Hepatocyte (2)
Malignant cell (2)
Skin (2)
Thyroid gland (2)
Brain (1)
B cell (1)
Breast (1)
Breast adenocarcinoma cell line (1)
Cell line cell (1)
Cornea (1)
Dendritic cell (1)
Extracellular exosome assembly (1)

Disease

Disease free (6)
Acute leukemia (5)
Breast cancer (3)
Colon cancer (3)
Malignant neoplasm of ovary (3)
Prostate adenocarcinoma (3)
Not Available (2)
Alzheimer's disease (2)
Cardiovascular system disease (2)
ARR7ox-4-11 (1)
Pancreatic tumor (1)
Central nervous system cancer (1)
Acute myocardial infarction (1)
Bone sarcoma (1)
Brain ischemia (1)
COVID-19 (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Coronavirus infectious disease (1)
Epithelioid sarcoma (1)
Idiopathic pulmonary fibrosis (1)
Lemierre's syndrome (1)
Melanoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Osteoarthritis (1)
Osteosarcoma (1)
Pancreatic cancer (1)
Rheumatoid arthritis (1)
Severe acute respiratory syndrome (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (123)
Mass spectrometry (57)
Shotgun proteomics (52)
Bottom-up proteomics (24)
Gel-based experiment (16)
Mass spectrometry assay (15)
Data-dependent acquisition (11)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-independent acquisition (8)
Top-down proteomics (7)
NMR spectroscopy (4)
Affinity proteomics (4)
Affymetrix/Illumina (1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
RNA mass spectrometry (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (31)
Liquid Chromatography MS - negative - reverse phase (29)
Liquid Chromatography MS - negative - hilic (14)
Liquid Chromatography MS - positive - hilic (13)
Q Exactive (7)
Orbitrap Fusion Lumos (6)
LTQ Orbitrap Velos (5)
Orbitrap Fusion (4)
LTQ Orbitrap Elite (4)
Illumina HiSeq 2000 (3)
Orbitrap Exploris 480 (3)
LTQ Orbitrap (3)
Gas Chromatography MS - (3)
Gas Chromatography MS - positive (3)
Liquid Chromatography MS - negative (3)
Illumina NovaSeq 6000 (2)
Instrument (2)
Orbitrap Eclipse (2)
Illumina HiSeq 2000 platform (1)
HPC services from the University of Granada (http://alhambra.ugr.es) (1)
Axon- GenePix4000B (1)
Illumina NovaSeq X (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Xevo G2 Q-Tof (1)
LTQ (1)
Q Exactive HF (1)
Q Exactive Plus (1)
SolariX (1)
TimsTOF Pro (1)

Publication Date

2012 (61)
2015 (55)
2010 (53)
2014 (52)
2013 (49)
2023 (46)
2025 (43)
2024 (43)
2016 (42)
2026 (41)
2011 (37)
2022 (34)
2021 (28)
2008 (18)
2020 (17)
2009 (16)
2018 (14)
2017 (12)
2007 (12)
2019 (11)
2006 (3)
2005 (1)

UNIPROT ID/AC

1433A_SOYBN (2)
1433B_SOYBN (2)
1433C_SOYBN (2)
1433D_SOYBN (2)
2SS_SOYBN (2)
3847.GLYMA0042S100.1 (2)
3847.GLYMA0070S50.1 (2)
3847.GLYMA01G05321.1 (2)
3847.GLYMA01G05765.1 (2)
3847.GLYMA01G09540.1 (2)
3847.GLYMA01G09640.1 (2)
3847.GLYMA01G14160.1 (2)
3847.GLYMA01G22140.1 (2)
3847.GLYMA01G23427.1 (2)
3847.GLYMA01G25116.1 (2)
3847.GLYMA01G27160.1 (2)
3847.GLYMA01G29440.1 (2)
3847.GLYMA01G33803.1 (2)
3847.GLYMA01G35730.1 (2)
3847.GLYMA01G35820.1 (2)
3847.GLYMA01G42950.2 (2)
3847.GLYMA02G01060.2 (2)
3847.GLYMA02G01170.1 (2)
3847.GLYMA02G04090.1 (2)
3847.GLYMA02G06710.1 (2)
3847.GLYMA02G07430.1 (2)
3847.GLYMA02G07740.1 (2)
3847.GLYMA02G11920.1 (2)
3847.GLYMA02G14495.1 (2)
3847.GLYMA02G14521.1 (2)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000247315 (5)
ENSG00000147251 (4)
ENSG00000229353 (3)
ENSG00000214897 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17596 (22)
CHEBI:17368 (21)
CHEBI:15741 (19)
CHEBI:16704 (19)
CHEBI:17295 (19)
CHEBI:16015 (18)
CHEBI:17568 (18)
CHEBI:17895 (18)
CHEBI:17992 (18)
CHEBI:30769 (18)
CHEBI:15756 (17)
CHEBI:16027 (17)
CHEBI:16335 (17)
CHEBI:16750 (17)
CHEBI:17268 (17)
CHEBI:17351 (17)
CHEBI:18050 (17)
CHEBI:16196 (16)
CHEBI:16919 (16)
CHEBI:17203 (16)
CHEBI:18012 (16)
CHEBI:7916 (16)
CHEBI:15891 (15)
CHEBI:15971 (15)
CHEBI:16708 (15)
CHEBI:15428 (14)
CHEBI:15603 (14)
CHEBI:16040 (14)
CHEBI:16857 (14)
CHEBI:17053 (14)

Metabolite Name

Inosine (15)
Linoleic acid (15)
Hypoxanthine (14)
L-Phenylalanine (14)
L-Tyrosine (14)
Adenine (13)
Cytosine (13)
Guanosine (13)
Uracil (13)
Uridine (13)
Adenosine (12)
Creatine (12)
L-Glutamine (12)
Oleic acid (12)
Sucrose (12)
Taurine (12)
Betaine (11)
Citric acid (11)
Creatinine (11)
L-Lysine (11)
L-Proline (11)
Ornithine (11)
Sebacic acid (11)
Isoleucine (10)
L-Leucine (10)
Naringenin (10)
Palmitic acid (10)
Riboflavin (10)
Spermidine (10)
Azelaic acid (9)

First Public Date

2025 (1)
2023 (1)
2022 (1)
2021 (1)
2015 (1)
2014 (1)

Modelling Approach

Computational model (2)
Constraint-based model (2)
Ordinary differential equation model (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (13)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Institute of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology (2)
Research & Development, AbbVie, North Chicago, IL, 60064 (2)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University, Nanjing, Jiangsu,China. (2)
Zhejiang Provincial Key Laboratory of Medical Genetics, Key Laboratory of Laboratory Medicine, Ministry of Education, China, School of Laboratory Medicine and Life Sciences, Wenzhou Medical University (2)
"Institute of Biomedical and Pharmaceutical Sciences, Guangdong University of Technology, Guangzhou 510006, China" (1)
1. Institute of Comparative Medicine, College of Veterinary Medicine, Yangzhou University, Yangzhou 225009, China 2. Co-Innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou 225009, China (1)
1Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University (1)
1Department of Urology, Emory University School of Medicine, Atlanta, GA, USA (1)
Aalborg university (1)
AbbVie Bioresearch Center (1)
Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
Aix Marseille Univ, CNRS, BIP, UMR7281, IMM, FR3479 (1)
Anhui Province Key Laboratory of Medical Physics and Technology, Institute of Health and Medical Technology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China University of Science and Technology of China, Hefei, Anhui 230026, P. R. China Hefei Cancer Hospital, Chinese Academy of Sciences, Hefei, Anhui 230031, P. R. China Precision Medicine Research Laboratory of Anhui Province, Hefei, Anhui 230088, P. R. China (1)
Anhui Science and Technology University (1)
Cancer Biology, Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States (1)
Central South University (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Chemical Proteomics, Division of Chemistry I, MBB Dept., Biomedicum, Karolinska Insitute, Stockholm, Sweden (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Chief Scientific Offiser, Pelago Bioscience AB (1)
College of Animal Science and Technology, Anhui Agricultural University, Hefei 230036, P. R. China (1)
College of Animal Science, Jilin University, China (1)
Columbia University Department of Biological Sciences and Department of Chemistry (1)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (1)
DTU BIOENGINEERING Department of Biotechnology and Biomedicine PCET-Protein Glycoscience and Biotechnology Technical University of Denmark 2800 Kgs. Lyngby (1)
Dalian Institute of Chemcial and Physics, China (1)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (1)
Dalian Institute of Chemical and Physics, Chinese Academy of Sciences (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Submitter Keywords

Ersilia (2)
Machine Learning Model (2)

Classification

bacteria (1)

Modification

6x(2)H labeled dimethylated L-arginine (1)

Study type

Transcription profiling by array (252)
RNA-seq of coding RNA (44)
ChIP-seq (25)
RNA-seq of non coding RNA (17)
Methylation profiling by high throughput sequencing (13)
Unknown experiment type (10)
ChIP-chip by tiling array (7)
Transcription profiling by tiling array (5)
Comparative genomic hybridization by array (4)
Other (4)
Methylation profiling by array (2)
Transcription profiling by SAGE (1)
One-color microarray (1)
Plant - One-color microarray (1)
Human - One-color microarray (1)
RNAi profiling by array (1)
Genotyping by array (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)

Release Date

2025 (1402)
2022 (1197)
2024 (1153)
2023 (1105)
2021 (954)
2020 (665)
2019 (504)
2018 (416)
2017 (362)
2016 (329)
2015 (302)
2026 (230)
2014 (226)
2013 (177)
2012 (166)
2011 (117)
2010 (105)
2009 (63)
2008 (49)
2007 (28)
2005 (12)
2006 (11)
2004 (8)
2002 (4)
2003 (2)
2001 (2)
2000 (1)
1997 (1)

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Analysis of proteins in supernatant and precipitate fractions of human bronchial smooth muscle cells by 1D SDS-PAGE and quantitative LC-MS/MS

Supernatant and precipitate protein fractions of human bronchial smooth muscle cells (HBSMC) after sonication and centrifugation were analyzed using 1D SDS-PAGE. The gel lanes were cube-cut into thirty-three 1.1 mm x 1.1 mm x 1 mm (gel thickness) squares and each gel piece was subjected to in-gel d...

ORGANISM(S): Homo sapiens (Human)

2019-01-03 | PXD010036 | Pride

Proteomic analysis of focal cerebral ischemia/reperfusion injury in rats

Stroke is a leading cause of mortality and long-term disability and ischemic stroke accounts for 87% of all strokes. Though timely recanalization of the occluded vessel is essential in the treatment of ischemic stroke, it is well known to cause ischemia-reperfusion (I/R) injury which result in neuro...

ORGANISM(S): Rattus norvegicus (Rat)

2019-07-03 | PXD012151 | Pride

Middle cerebral artery occlusion (mcao) Proteomics Rat Time course Brain stroke Ischemia-reperfusion injury

Analysis of LDL-associated proteins using the method of digitized native protein mapping

The method of digitized native protein mapping, combining nondenaturing micro 2DE, grid gel-cutting and quantitative LC-MS/MS (in data-independent acquisition mode, or MSE), was improved by using a new MS/MS mode, ion mobility separation enhanced-MSE (HDMSE) and applied to analyze the area of human ...

ORGANISM(S): Homo sapiens (Human)

2016-05-17 | PXD003720 | Pride

Grid gel-cutting Quantitative lc-hdmse Human plasma low-density lipoprotein Protein-protein interactions Nondenaturing micro 2de Digitized native protein mapping

Preclinical pharmacokinetic characterization of (R)-ketamine injection, a novel antidepressant glutamatergic agent.

Not available

S-EPMC12678371 | biostudies-literature

P2Y₂R-Mediated PAK1 Activation Is Involved in ESM-1 Overexpression in RT-R-MDA-MB-231 through FoxO1 Regulation.

Not available

S-EPMC9454712 | biostudies-literature

Indirect Comparisons of Efficacy of Zanubrutinib Versus Orelabrutinib in Patients with R/R MCL: An Extended Follow-up Analysis.

Not available

S-EPMC12085368 | biostudies-literature