Johannes G G - OmicsDI

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Unknown (1726)
Transcriptomics (144)
Proteomics (106)
Models (80)
Genomics (59)
Metabolomics (28)

Organisms

Homo sapiens (171)
Andropogon gerardi (81)
Bacteria (81)
Bartonella quintana JK 31 (81)
Canis lupus familiaris (81)
Cnidaria (81)
Ensifer adhaerens (81)
Halictus scabiosae (81)
Human alphaherpesvirus 1 strain 17 (81)
Human alphaherpesvirus 1 strain KOS (81)
Human herpesvirus 2 strain 186 (81)
Human immunodeficiency virus 1 (81)
Mus musculus (67)
Saccharomyces cerevisiae (10)
Arabidopsis thaliana (6)
Rattus norvegicus (5)
Oryctolagus (2)
Escherichia coli CFT073 (2)
Equus caballus (2)
Drosophila melanogaster (2)
Pseudomonas putida S12 (1)
Streptococcus pyogenes M49 591 (1)
Collimonas fungivorans (1)
Nematostella vectensis (1)
Nicotiana benthamiana (1)
Enterococcus faecium (1)
Heterodera schachtii (1)
Cricetulus griseus (1)
Caenorhabditis elegans (1)
Plasmodium falciparum (1)

Organisms

Homo sapiens (2)

Repository

biostudies-arrayexpress (151)
pride (81)
BioModels (80)
EGA (50)
MetaboLights (27)
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ENA (2)
geo (1)
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Tissue

Cell culture (12)
Brain (7)
Heart (7)
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Fibroblast of lung (3)
Liver (3)
Blood cell (2)
Blood serum (2)
Colon (2)
Endothelium (2)
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HUVEC cell (2)
Hippocampus (2)
Permanent cell line cell (2)
Stem cell (2)
Adipose tissue (1)
B cell (1)
Bile duct (1)
Blood (1)
Bone marrow (1)
Breast (1)
Cardiac muscle cell (1)
Carotid artery (1)
Carpel (1)
Cauline leaf (1)
Cell line cell (1)
Cotyledon (1)
Embryonic stem cell (1)
Endocervix (1)
Endosperm (1)

Disease

Acute stress disorder (2)
Acute leukemia (1)
Adenocarcinoma (1)
Breast cancer (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Clostridium difficile colitis (1)
Colon cancer (1)
Dehydration (1)
Extrapulmonary tuberculosis (1)
Influenza (1)
Lymph node tuberculosis (1)
Malignant neoplasm of ovary (1)
Parkinson's disease (1)
Pulmonary tuberculosis (1)
Small intestine cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (81)
Shotgun proteomics (43)
Mass spectrometry (21)
Bottom-up proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (8)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Data-dependent acquisition (6)
Mass spectrometry assay (4)
Data-independent acquisition (4)
Affinity proteomics (3)
Illumina HiSeq 2000 (2)
NMR spectroscopy (2)
All-ion fragmentation (2)
Gel-based experiment (2)
SWATH MS (2)
Top-down proteomics (2)
Illumina MiSeq, ILLUMINA (1)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2500 (1)
Illumina Genome Analyzer IIx (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Q Exactive (8)
Liquid Chromatography MS - positive - reverse phase (8)
Liquid Chromatography MS - negative - reverse phase (6)
Q Exactive HF (4)
Liquid Chromatography MS - positive - hilic (4)
Orbitrap Fusion Lumos (3)
Liquid Chromatography MS - negative - hilic (3)
Illumina HiSeq 2000 (2)
Q Exactive Plus (2)
TimsTOF Ultra (2)
TripleTOF 5600 (2)
Nuclear Magnetic Resonance (NMR) (2)
Liquid Chromatography MS - (2)
TruSeq® Nano (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
TripleTOF 6600 (1)
LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
TimsTOF Pro (1)
LTQ Velos (Thermo Scientific) (1)
6490 Triple Quadrupole LC/MS (Agilent) (1)
SYNAPT G2 HDMS (Waters) (1)
Flow injection analysis MS - positive (1)

Publication Date

2005 (68)
2013 (28)
2024 (25)
2010 (25)
2022 (24)
2014 (23)
2023 (22)
2011 (18)
2025 (18)
2026 (16)
2020 (13)
2021 (12)
2015 (12)
2008 (12)
2012 (10)
2009 (8)
2016 (7)
2017 (7)
2019 (5)
2018 (5)
2007 (2)
2002 (2)
2003 (1)

UNIPROT ID/AC

Q9BQG2 (66)
B3KXN9 (66)
Q53HM1 (66)
Q86SK9 (66)
E9KL42 (66)
Q3I5F7 (66)
P33897 (66)
Q99884 (66)
A8MU28 (66)
P35219 (66)
Q5FC00 (66)
Q15274 (66)
Q9NX14 (66)
Q9Y345 (66)
Q86YT5 (66)
Q53H96 (66)
Q9NWU1 (66)
Q96C36 (66)
Q9NRX3 (66)
O75610 (66)
Q6UWQ5 (66)
Q96KJ9 (66)
Q9UEF7 (66)
Q8TF08 (66)
Q7Z4L0 (66)
Q7GXZ8 (66)
Q7GXY8 (66)
Q9H0N5 (66)
Q6YFQ2 (66)
Q6FGA0 (66)

CHEBI ID

CHEBI:16919 (75)
CHEBI:16113 (71)
CHEBI:16761 (68)
CHEBI:58235 (66)
CHEBI:36986 (66)
CHEBI:58052 (66)
CHEBI:57880 (66)
CHEBI:57373 (66)
CHEBI:28508 (66)
CHEBI:28095 (66)
CHEBI:57795 (66)
CHEBI:58480 (66)
CHEBI:58376 (66)
CHEBI:57310 (66)
CHEBI:9407 (66)
CHEBI:33569 (66)
CHEBI:57781 (66)
CHEBI:57812 (66)
CHEBI:16769 (66)
CHEBI:58044 (66)
CHEBI:350546 (66)
CHEBI:16577 (66)
CHEBI:57462 (66)
CHEBI:57973 (66)
CHEBI:35291 (66)
CHEBI:16302 (66)
CHEBI:50211 (66)
CHEBI:46245 (66)
CHEBI:57340 (66)
CHEBI:15035 (66)

Metabolite Name

Beta-alanine (5)
Choline (5)
Indoleacetylglutamine (4)
Cys-gly, oxidized (4)
5-acetylamino-6-formylamino-3-methyluracil (4)
5-acetylamino-6-amino-3-methyluracil (4)
1-methylurate (4)
Pyrraline (4)
Guanidinosuccinate (4)
Gamma-glutamylisoleucine* (4)
3-aminoisobutyrate (4)
N-methylproline (4)
Tryptophan betaine (4)
Methionine sulfone (4)
Theobromine (4)
Hydroxycotinine (4)
Cotinine (4)
S-allylcysteine (4)
Homostachydrine* (4)
N-acetyl-1-methylhistidine* (4)
Cysteinylglycine (4)
Quinate (4)
Trimethylamine N-oxide (4)
Stachydrine (4)
Quinolinate (4)
Prolylglycine (4)
Pipecolate (4)
Phosphate (4)
N-acetylputrescine (4)
N-acetylneuraminate (4)

First Public Date

2017 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (11)
Delayed differential equation model (2)
Mathematical model (1)

Lab affiliation

Department of Experimental and Translational Ophthalmology, University Medical Center, Johannes Gutenberg University, Mainz, Germany (3)
German Center for Neurodegenerative Diseases (DZNE) Otfried-Müller-Strasse 23 72076 Tübingen Germany (3)
Institute for Vascular Signalling, Centre for Molecular Medicine, Goethe University, Frankfurt am Main, Germany. (3)
Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (3)
Proteomics Core Facility, University of Gothenburg (3)
Technische Universität München, Dept. Chemistry, Chair of Biotechnology (2)
AstraZeneca (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 A-1090 Vienna, Austria (1)
Center for Protein Assemblies and Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer Strasse 8, 85747 Garching, Germany (1)
Center for Protein Assemblies and Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer Strasse 8, 85748 Garching, Germany (1)
Center for Protein Assemblies, Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer Str. 8, 85747 Garching, Germany (1)
Center for Protein Assemblies, Department of Chemistry, Technische Universität München, Ernst-Otto-Fischer-Straße 8, 85747 Garching, Germany (1)
Center for Protein Assemblies, Department of Chemistry, Technische Universität München, Lichtenbergstrasse 4, 85747 Garching, Germany (1)
Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain (1)
Chair of Proteomics and Bioanalytics, TU Munich (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich Germany (1)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany (1)
Clinical Proteomics Group, Department of Medical Biochemistry, Academic Medical Center, University of Amsterdam, Amsterdam, the Netherlands. (1)
Coburg University of Applied Sciences and Arts, Institute for Bioanalysis, Friedrich-Streib-Str. 2, D-96450 Coburg, Germany (1)
Department Preclinical Development and Validation, Unit Proteomics, Fraunhofer Institute for Cell Therapy and Immunology, Leipzig, Germany (1)
Department for Molecular Systems Biology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Department of Animal Breeding and Genetics Swedish University of Agricultural Sciences (1)
Department of Biology, Philipps University Marburg, Marburg, Germany (1)
Department of Cardiac Development and Remodeling, Max Planck Institute for Heart and Lung Research (1)
Department of Cardiac Development and Remodelling, Max Planck Institute for Heart and Lung Research, Bad Nauheim, Germany. (1)
Department of Cellular and Molecular Medicine, KU Leuven, Belgium (1)
Department of Clinical Microbiology, Sahlgrenska University Hospital, Gothenburg, Sweden (1)

IsPrivate

False (80)

Model Flag

Non Kinetic (66)

Submitter Keywords

Immuno-oncology (3)

Study type

Transcription profiling by array (119)
RNA-seq of coding RNA (9)
ChIP-seq (5)
Unknown experiment type (4)
Methylation profiling by array (4)
Comparative genomic hybridization by array (2)
ChIP-chip by tiling array (1)
Plant - High-throughput sequencing (1)
ChIP-chip by array (1)
CLIP-seq (1)
DNA-seq (1)
Proteomic profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (216)
2023 (205)
2021 (180)
2022 (180)
2024 (160)
2020 (134)
2019 (99)
2018 (96)
2016 (81)
2017 (81)
2015 (76)
2013 (72)
2014 (65)
2011 (45)
2010 (44)
2012 (40)
2026 (36)
2008 (19)
2009 (18)
2007 (10)
2002 (3)
2006 (3)
2001 (3)
2005 (2)
2003 (2)
2004 (2)
2000 (2)
1999 (1)
1998 (1)

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The G Protein-coupled Receptor P2Y14 Influences Insulin Release and Smooth Muscle Function in Mice

UDP-sugars were identified as extracellular signaling molecules, assigning a new function to these compounds in addition to their well defined role in intracellular substrate metabolism and storage. Previously regarded as an orphan receptor, the G protein-coupled receptor (GPCR) P2Y14 (GPR105) was f...

ORGANISM(S): Mus musculus

2014-07-11 | E-GEOD-59285 | biostudies-arrayexpress

3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes

Studying the dynamics of three-dimensional (3D) chromatin structure is essential to the understanding of biological processes in the nucleus. Integrative analysis of multi-omics data in recent publications have provided comprehensive and multilevel insight into 3D genome organization emphasizing its...

ORGANISM(S): Mus Musculus (ncbitaxon:10090)

2024-07-30 | MSV000095480 | MassIVE

mRNAs translated at eIF4F

Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray. Although most eukaryotic mRNAs need a functional cap binding complex eIF4F for efficient 5' end-dependent scanning to initiate translation, picornaviral, hepatitis C vi...

ORGANISM(S): Homo sapiens

2002-06-27 | E-GEOD-62 | biostudies-arrayexpress

Structural mechanism of FusB-mediated rescue from fusidic acid inhibition of protein synthesis

The antibiotic resistance protein FusB rescues protein synthesis from inhibition by fusidic acid (FA), which locks elongation factor G (EF-G) to the ribosome after GTP hydrolysis. Here, we present time-resolved single-particle cryo-EM structures explaining the mechanism of FusB-mediated rescue. FusB...

ORGANISM(S): Staphylococcus aureus

2025-05-07 | PXD062129 | Pride