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TranscriptomicsRNA-seq of human tissues
RNA-seq was performed of tissue samples from human individuals representing different tissues in order to study the human tissue transcriptome. This submission contains 14 samples used in the paper A proteogenomics workflow integrating discovery, curation and validation reveals human novel protein c...
ORGANISM(S): Homo sapiens 
2017-08-01 | E-MTAB-5782 | biostudies-arrayexpress
TranscriptomicsDiurnal gene expression in Populus wild type and lhy RNAi line 10
Previous studies have shown that a considerable proportion of the Arabidopsis genome cycles under circadian and/or diurnal conditions (Edwards et al., 2006 PMID: 16473970, Blaesing et al., 2005 PMID 16299223). It is likely that the correct phasing of gene expression plays an important role in improv...
ORGANISM(S): Populus tremula x Populus tremuloides 
2018-03-13 | E-MTAB-4516 | biostudies-arrayexpress
TranscriptomicsRNA-seq of A431 cell line after gefitinib treatment
RNA sequencing of A431 cell line samples before and after gefitinib treatment, at 0, 2, 6 and 24 hours, was performed in order to characterize the cell line's early and late response to this drug, and to compare against proteomics (mass spectrometry) characterization of the cell line using the same ...
ORGANISM(S): Homo sapiens 
2016-12-01 | E-MTAB-5285 | biostudies-arrayexpress
Proteomics,MultiomicsHiRIEFII proteomics and proteogenomics of A431 cells and five histologically normal tissues
High Resolution Isoelectric Focusing (HiRIEF) LC-MS was used to analyze samples from the human A431 cell line and also samples of histologically normal tissues. The high analytical depth afforded by HiRIEF permitted proteogenomics on these two sample sets (A431 cells and normal tissues). The A431 d...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2018-10-04 | MSV000083000 | MassIVE
Proteomics,MultiomicsHiRIEF deep proteomics of A431 human vulvar cancer cell line and N2A mouse neuroblastoma cell line
Here we present high resolution data from two cancer cell lines. A human cell line, A431 was treated with a drug at different time points and then fractionated into its different subcellular compartments (nuclear, organellar, soluble,whole cell). Protein extracts were trypsinized, peptides separated...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) Mus Musculus (ncbitaxon:10090) 
2016-07-20 | MSV000079945 | MassIVE
ProteomicsProteome Profiling in Cerebrospinal Fluid Reveals Novel Biomarkers of Alzheimer’s Disease
Neurodegenerative diseases are a growing burden and there is an urgent need for better biomarkers for diagnosis, prognosis and treatment efficacy. Structural and functional brain alterations are reflected in the protein composition of cerebrospinal fluid (CSF). Alzheimer’s disease (AD) patients ha...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2022-01-06 | MSV000088649 | MassIVE
ProteomicsBreast cancer proteome landscape
Proteome characterization of 45 breast tumors using HiRIEF nanoLC-MS/MS.
ORGANISM(S): Homo Sapiens (human) 
2019-02-04 | PXD008841 | JPOST Repository
ProteomicsTumor and adjacent normal tissue
Proteome characterization of 5 breast tumors and adjacent normal tissue using HiRIEF nanoLC-MS/MS.
ORGANISM(S): Homo Sapiens (human) 
2019-02-04 | PXD011385 | JPOST Repository
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