Johnson J-A JA - OmicsDI

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Unknown (1956)
Proteomics (45)
Metabolomics (21)
Genomics (13)
Transcriptomics (7)

Organisms

Homo sapiens (30)
Arabidopsis thaliana (2)
Mus musculus (2)
Myzus persicae (1)
Pogonomyrmex rugosus (1)
Potato leafroll virus (1)

Repository

MassIVE (29)
MetaboLights (20)
pride (14)
biostudies-arrayexpress (11)
EGA (9)
PanoramaPublic (2)
GNPS (1)

Tissue

Epithelial cell (4)
Cell culture (3)
Monocyte (3)
Macrophage (2)
Melanocyte (2)
T cell (2)
B cell (1)
Lung (1)
Melanoma cell (1)
Primary cell (1)
Tibia (1)
Whole body (1)

Disease

Melanoma (5)
Avian influenza (3)
Influenza (3)
Bone osteosarcoma (1)
Breast cancer (1)

Technology Type

Mass spectrometry (15)
Mass Spectrometry (14)
Affinity purification coupled with mass spectrometry proteomics (6)
Shotgun proteomics (6)
NMR spectroscopy (5)
Mass spectrometry assay (3)
Illumina HiSeq 2500 (1)
Bottom-up proteomics (1)
Data-dependent acquisition (1)
SRM/MRM (1)

Instrument Platform

GC-MS (9)
LTQ Orbitrap Velos (9)
Liquid Chromatography MS - positive - reverse phase (9)
GC MS (6)
Liquid Chromatography MS - negative - reverse phase (5)
Nuclear Magnetic Resonance (NMR) - (5)
QExactive (2)
Liquid Chromatography MS - positive - hilic (2)
LTQ FT (1)
MaXis (1)
Agilent 7890A GC with 5975C inert XL MSD (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
Agilent SPE-IMS-MS (1)
Flow injection analysis MS – POS (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
ESI-ION-TRAP (1)

Publication Date

2023 (14)
2016 (13)
2021 (8)
2017 (6)
2022 (6)
2015 (5)
2024 (5)
2018 (3)
2020 (3)
2014 (2)
2012 (2)
2011 (2)
2010 (2)
2013 (1)
2008 (1)
2007 (1)
2006 (1)
2025 (1)

CHEBI ID

CHEBI:16449 (5)
CHEBI:24898 (5)
CHEBI:25017 (5)
CHEBI:25094 (5)
CHEBI:27266 (5)
CHEBI:15428 (4)
CHEBI:16359 (4)
CHEBI:16811 (4)
CHEBI:17234 (4)
CHEBI:18186 (4)
CHEBI:30769 (4)
CHEBI:78320 (4)
CHEBI:15354 (3)
CHEBI:15366 (3)
CHEBI:15741 (3)
CHEBI:15891 (3)
CHEBI:16135 (3)
CHEBI:17368 (3)
CHEBI:17418 (3)
CHEBI:17568 (3)
CHEBI:17750 (3)
CHEBI:17790 (3)
CHEBI:18012 (3)
CHEBI:26806 (3)
CHEBI:28865 (3)
CHEBI:30768 (3)
CHEBI:30772 (3)
CHEBI:30915 (3)
CHEBI:35038 (3)
CHEBI:1148 (2)

Metabolite Name

Leucine (4)
Succinate (4)
Alanine (3)
Cholic acid (3)
Isoleucine (3)
Methionine (3)
Tris(2-butoxyethyl) phosphate (3)
Valine (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
4-Hydroxybenzoic acid (2)
9(10)-EpOME (2)
AMP (2)
Adenosine (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Caffeine (2)
Choline (2)
Citric acid (2)
Elaidic acid (2)
Guanine (2)
Lactic acid (2)
Lysine (2)
Lyso-PC(16:0) (2)
Methanol (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Taurocholic acid (2)
Xanthine (2)

Modification

Not available (1)

Study type

ChIP-seq (4)
Transcription profiling by array (4)
RNA-seq of coding RNA (2)
Unknown experiment type (1)

Release Date

2021 (195)
2022 (177)
2023 (171)
2025 (169)
2024 (166)
2020 (135)
2019 (122)
2018 (110)
2015 (105)
2017 (100)
2014 (91)
2016 (88)
2013 (73)
2012 (66)
2010 (47)
2011 (46)
2009 (32)
2026 (30)
2008 (26)
2007 (6)
2006 (4)
2005 (3)
2002 (2)
2004 (1)
2003 (1)
1998 (1)

Lab affiliation

Tumor Biology Department Molecular Medicine Program Moffitt Cancer Center Tampa, FL, USA (3)
Department of Laboratory Medicine Department of Bioengineering and Therapeutic Sciences University of California, San Francisco (1)
Departments of Pediatrics and Genetics, Stanford University, Stanford, CA, USA. (1)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Dept. Cellular Molecular Pharmacology, University of San Francisco (UCSF), USA (1)
Dept. Cellular and Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
Director of The Breast Tumor Immunology Laboratory Women’s Cancer Program Dana-Farber Cancer Institute Instructor in Medicine Harvard Medical School (1)
Proteomics (1)
Tumor Biology Moffitt Cancer Center Tampa, FL, USA (1)
UCSF (1)
USDA-ARS, Cornell University, Boyce Thompson Institute (1)
Weizmann Institute of Science Israel (1)

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Improving Patient Care Using the Johnson-Neyman Analysis of Heterogeneity of Treatment Effects According to Individuals' Baseline Characteristics.

Not available

S-EPMC4335806 | biostudies-literature

Multiomic single-cell sequencing defines tissue-specific responses in Stevens-Johnson syndrome and toxic epidermal necrolysis.

Not available

S-EPMC11461852 | biostudies-literature

Untargeted metabolomics analyses and contaminant chemistry of Dreissenid mussels at the Maumee River Area of Concern in the Great Lakes

Bivalves serve as an ideal ecological indicator; hence, their use by the NOAA Mussel Watch Program to monitor environmental health. This study aimed to expand the baseline knowledge of using metabolic end points in environmental monitoring by investigating the dreissenid mussel metabolome in the ...

2024-06-03 | MTBLS6311 | MetaboLights

Quantitative analysis of the effects of brushing, flossing, and mouthrinsing on supragingival and subgingival plaque microbiota: 12-week clinical trial.

Not available

S-EPMC11102210 | biostudies-literature

Quantitative analysis of the effects of essential oil mouthrinses on clinical plaque microbiome: a parallel-group, randomized trial.

Not available

S-EPMC11102605 | biostudies-literature

Transcription profiling of mouse vehicle and sAPPalpha-treated hippocampal slice cultures

Gene expression changes induced by alpha-secretase cleaved amyloid precursor protein (sAPPalpha) in organotypic hippocampal slice cultures of male, postnatal day 15 mice (C57B6/SJL). Hippocampal slice cultures were treated with phosphate buffered saline (GSM26700, GSM26701, GSM26702) or 1 nM sAPPal...

ORGANISM(S): Mus musculus

2007-10-10 | E-GEOD-1555 | biostudies-arrayexpress

Longitudinal multi-omics reveals subset-specific mechanisms underlying irritable bowel syndrome

The gut microbiome has been implicated in multiple human chronic gastrointestinal (GI) disorders. Determining its mechanistic role in disease has been difficult due to apparent disconnects between animal and human studies and lack of an integrated multi-omics view of disease-specific physiologica...

2020-09-08 | MTBLS1396 | MetaboLights

Protein kinase Cepsilon interacts with cytochrome c oxidase subunit IV and enhances cytochrome c oxidase activity in neonatal cardiac myocyte preconditioning.

Not available

S-EPMC1383677 | biostudies-literature

Antibody response to the Janssen/Johnson & Johnson SARS-CoV-2 vaccine in patients with rheumatic and musculoskeletal diseases.

Not available

S-EPMC8440413 | biostudies-literature

A Computable Electronic Health Record ARDS Classifier and the Association Between the <i>MUC5B</i> Promoter Polymorphism and ARDS in Critically Ill Adults.

Not available

S-EPMC12867120 | biostudies-literature