Johnston K K - OmicsDI

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Unknown (1855)
Proteomics (36)
Transcriptomics (27)
Genomics (12)
Metabolomics (2)

Organisms

Homo sapiens (29)
Mus musculus (20)
Drosophila melanogaster (7)
Saccharomyces cerevisiae (5)
Gallus gallus (2)
Bos taurus (2)
Rattus norvegicus (2)
Cryptococcus bacillisporus (1)
Streptococcus pneumoniae (1)
Danio rerio (1)
Bacteria (1)
Escherichia coli (1)
Phascolarctos cinereus (1)
Rattus rattus (1)
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120200 (1)

Repository

biostudies-arrayexpress (34)
pride (30)
EGA (5)
MassIVE (4)
jPOST (2)
MetaboLights (2)

Tissue

Brain (6)
Cell culture (6)
Neutrophil (5)
B cell (3)
Blood (3)
Epithelial cell (3)
Liver (3)
B-lymphocyte (2)
Blood plasma (2)
Heart (2)
Leukocyte (2)
Macrophage (2)
Permanent cell line cell (2)
T cell (2)
B-cell leukemia cell (1)
B-cell lymphoma cell (1)
Breast invasive ductal carcinoma cell (1)
Cell suspension culture (1)
Cerebral cortex neuron (1)
Chronic lymphocytic leukemia cell (1)
Dendritic cell (1)
Embryonic stem cell (1)
Erythrocyte (1)
Fibroblast (1)
Forebrain neuroblast (1)
Lung (1)
Lymph node (1)
Milk (1)
Pancreatic adenocarcinoma cell line (1)
T-lymphocyte (1)

Disease

Glioblastoma (3)
Breast cancer (2)
Chronic lymphocytic leukemia (2)
Lymphoma (2)
Colorectal cancer (1)
Lung squamous cell carcinoma (1)
Alzheimer's disease (1)
Burkitt lymphoma (1)
COVID-19 (1)
Cervix carcinoma (1)
Cystic fibrosis (1)
Human immunodeficiency virus infectious disease (1)
Leukemia (1)
Neurodegenerative disease (1)
Obesity (1)
Pancreatic cancer (1)
Tuberculosis (1)

Technology Type

Mass Spectrometry (30)
Shotgun proteomics (16)
Bottom-up proteomics (5)
Data-dependent acquisition (3)
Data-independent acquisition (3)
Top-down proteomics (3)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (1)
HDMSE (1)
SWATH MS (1)

Instrument Platform

Illumina NovaSeq X (2)
GeneChip Scanner 3000 [Affymetrix] (1)
NanoDrop (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion (1)
Orbitrap Fusion Lumos (1)
Synapt MS (1)
Exactive (Thermo Scientific) (1)
Q Exactive (1)

Publication Date

2025 (9)
2021 (7)
2026 (6)
2012 (6)
2016 (5)
2022 (5)
2013 (4)
2010 (4)
2015 (3)
2011 (3)
2023 (3)
2017 (3)
2019 (3)
2018 (3)
2014 (2)
2008 (2)
2007 (1)
2006 (1)
2003 (1)
2020 (1)

CHEBI ID

CHEBI:116314 (1)
CHEBI:11805 (1)
CHEBI:132983 (1)
CHEBI:132994 (1)
CHEBI:133032 (1)
CHEBI:133046 (1)
CHEBI:133065 (1)
CHEBI:133136 (1)
CHEBI:133139 (1)
CHEBI:133141 (1)
CHEBI:133144 (1)
CHEBI:133172 (1)
CHEBI:133185 (1)
CHEBI:133186 (1)
CHEBI:133469 (1)
CHEBI:133523 (1)
CHEBI:133533 (1)
CHEBI:133560 (1)
CHEBI:133583 (1)
CHEBI:133606 (1)
CHEBI:133647 (1)
CHEBI:133649 (1)
CHEBI:133672 (1)
CHEBI:133675 (1)
CHEBI:133677 (1)
CHEBI:142245 (1)
CHEBI:14336 (1)
CHEBI:15354 (1)
CHEBI:15356 (1)
CHEBI:15428 (1)

Metabolite Name

Cytidine (2)
Guanine (2)
Uridine (2)
Vanillin (2)
(-)-epigallocatechin (1)
(4-chloro-2-methylphenoxy)acetic acid (1)
(R)-2-hydroxystearic acid (1)
1,3-dimethylurate (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPC (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-arachidonoyl-GPE (P-16:0/20:4) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPC (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-linoleoyl-GPE (P-16:0/18:2) (1)
1-(1-enyl-palmitoyl)-2-palmitoyl-GPC (P-16:0/16:0) (1)
1-(1-enyl-palmitoyl)-GPE (P-16:0) (1)
1-(1-enyl-stearoyl)-2-linoleoyl-GPE (P-18:0/18:2) (1)
1-(1-enyl-stearoyl)-GPE (P-18:0) (1)
1-arachidonoyl-GPC (20:4n6) (1)
1-arachidonoyl-GPI (20:4) (1)
1-linoleoyl-2-arachidonoyl-GPC (18:2/20:4n6) (1)
1-linoleoyl-GPC (18:2) (1)
1-linoleoyl-GPE (18:2) (1)
1-methylguanidine (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
1-methylxanthine (1)
1-oleoyl-2-linoleoyl-GPC (18:1/18:2) (1)
1-oleoyl-GPC (18:1) (1)
1-oleoyl-GPI (18:1) (1)
1-palmitoyl-2-arachidonoyl-GPC (16:0/20:4) (1)
1-palmitoyl-2-arachidonoyl-GPE (16:0/20:4) (1)

Study type

Transcription profiling by array (17)
ChIP-seq (6)
RNA-seq of coding RNA (3)
RNA-seq of coding RNA from single cells (2)
Transcription profiling by SAGE (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)
DNA-seq (1)
RNA-seq of non coding RNA (1)

Release Date

2021 (223)
2022 (200)
2023 (195)
2024 (193)
2025 (186)
2020 (157)
2019 (121)
2018 (109)
2016 (84)
2017 (74)
2014 (65)
2015 (63)
2012 (39)
2013 (38)
2011 (32)
2026 (28)
2010 (26)
2009 (18)
2008 (16)
2006 (7)
2007 (5)
2005 (3)
2004 (2)
2002 (2)
2003 (1)
2000 (1)
1997 (1)

Lab affiliation

La Trobe University, Melbourne, Australia (2)
Babraham Institute Cambridge CB22 3AT (1)
Canary Center at Stanford for Cancer Early Detection Department of Radiology School of Medicine Stanford University (1)
Cancer Research UK, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE (1)
Cancer Sciences Faculty of Medicine University of Southampton (1)
Cancer Sciences Unit, Faculty of Medicine, University of Southampton, Southampton, UK (1)
Cancer Sciences, Faculty of Medicine, University of Southampton, UK (1)
Centre for Infection and Immunity, Queen’s University Belfast, Belfast, Northern Ireland, BT9 7BL, UK. (1)
Centre for Inflammation Research, Institute for Regeneration and Repair (1)
Centre for Inflammation Research, Institute for Regeneration and Repair, University of Edinburgh (1)
Centre for Inflammation Research, Queen’s Medical Research Institute, University of Edinburgh, Edinburgh, UK (1)
Centre for Inflammation research, Institute for Regeneration and Repair, University of Edinburgh (1)
Clinical and Experimental Sciences Unit, Faculty of Medicine, University of Southampton, Southampton SO16 6YD, UK Centre for Proteomic Research, Institute for Life Sciences, University of Southampton, Highfield Campus, Southampton, SO17 1BJ, UK (1)
Department of Chemistry and Biochemistry, Brigham Young University, Provo, UT, 84602 (1)
Department of Chemistry and Biotechnology, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan Department of Bioengineering, School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan (1)
Department of Earth and Environmental Sciences, Manchester Institute of Biotechnology, The University of Manchester (1)
Department of Microbiology & Immunology, Cornell University College of Veterinary Medicine (1)
Dr. Jayaseelan Murugaiyan, Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Free University of Berlin, Robert-von-Ostertag-Str. 7-13, Berlin 14163, Germany. Jayaseelan.murugaiyan@fu-berlin.de Department of Biotechnology, SRM University AP, Andhra Pradesh, Neerukonda, Mangalagiri, Andhra Pradesh 522 502, India. jayaseelan.m@srmap.edu.in (1)
GlaxoSmithKline (GSK) (1)
Hayley Sharpe, Signalling, Babraham Institute, Cambridge, UK (1)
Institute for Molecular Biosciences University of Queensland Brisbane Qld 4072 Australia (1)
La Trobe University (1)
Living Systems Institute, University of Exeter, EX4 4QD, UK (1)
MRC London Institute of Medical Sciences Proteomics & Metabolomics Facility Hammersmith Hospital Campus Du Cane Road London, W12 0NN United Kingdom (1)
School of Life and Environmental Sciences, Charles Perkins Centre, University of Sydney, Australia (1)
School of Veterinary Science, The University of Queensland, Gatton, QLD 4343, Australia (1)
Spiros D. Garbis, PhD Faculty of Medicine, Cancer Sciences and CES Units, Institute for Life Sciences, University of Southampton 3001, Life Sciences Building 85, Highfield Campus Southampton, SO17 1BJ, UK Tel: 0044 02380593483 (1)
The Babraham Institute, Babraham Research Campus, Cambridge, UK (1)
The Michael V. Johnston Center for Developmental Neuroscience Department of Neurology Department of Pediatrics Johns Hopkins University School of Medicine Kennedy Krieger Institute (1)

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Total synthesis of the chlorine-containing hapalindoles K, A, and G.

Not available

S-EPMC3357111 | biostudies-literature

Alternating hemiplegia of childhood-related neural and behavioural phenotypes in Na+,K+-ATPase α3 missense mutant mice.

Not available

S-EPMC3603922 | biostudies-literature

The noncoding RNAs SNORD50A and SNORD50B bind K-Ras and are recurrently deleted in human cancer.

Not available

S-EPMC5324971 | biostudies-literature

Comparative Metabolomic Sampling of Upper and Lower Airways by Four Different Methods to Identify Biochemicals That May Support Bacterial Growth

Bacteria need nutrients from the host environment to survive, yet we know little about which biochemicals are present in the airways (the metabolome), which of these biochemicals are essential for bacterial growth and how they change with airway disease. The aims of this pilot study were to develop ...

2019-06-13 | MTBLS179 | MetaboLights

The Essential Genome of Escherichia coli K-12.

Not available

S-EPMC5821084 | biostudies-literature

Surgical fixation with K-wires versus casting in adults with fracture of distal radius: DRAFFT2 multicentre randomised clinical trial.

Not available

S-EPMC8767805 | biostudies-literature

Biomarker clusters differentiate phenotypes of lumbar spine degeneration and low back pain: The Johnston County Osteoarthritis Project.

Not available

S-EPMC9387345 | biostudies-literature

Bulk RNA-seq from Trex1 KO in heart

Bulk RNA-seq data for Trex1 WT and KO mice from the heart. Used for manuscript in submission at Science Advances.