Juan Chen C - OmicsDI

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Unknown (200)
Transcriptomics (56)
Proteomics (50)
Genomics (16)
Metabolomics (5)
Models (3)

Organisms

Homo sapiens (60)
Schizosaccharomyces pombe (25)
Mus musculus (16)
Escherichia coli (5)
Arabidopsis thaliana (4)
Oryza sativa Japonica Group (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Oryctolagus cuniculus (1)
Triticum turgidum subsp. durum (1)
Rhodopseudomonas palustris (1)
Zea mays (1)
Acidovorax (1)
Chlorocebus sabaeus (1)
Cronobacter sakazakii ATCC BAA-894 (1)
Nicotiana tabacum (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Staphylococcus aureus (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Dendrobium sp. XMW-2002-13 (1)

Repository

biostudies-arrayexpress (56)
iProX (30)
pride (18)
EGA (16)
MetaboLights (5)
BioModels (3)
MassIVE (2)

Tissue

Cell culture (10)
Epithelial cell (9)
Stomach (2)
Blood cancer cell (1)
Bone cancer cell line (1)
Brain (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cecum cancer cell line (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
Epithelium of stomach (1)
Hepatocyte (1)
Kidney cancer cell (1)
Leaf (1)
Liver cancer cell (1)
Lymph node (1)
Lymphoid cell (1)
Neuroblastoma cell (1)
Neuroblastoma cell line (1)
Non-small cell lung cancer cell (1)
Ovary cancer cell (1)
Ovary cancer cell line (1)
Permanent cell line cell (1)
Prostate cancer cell (1)
Prostate cancer cell line (1)
Prostate gland (1)
Renal cancer cell line (1)

Disease

Lymphoid leukemia (2)
Lung cancer (2)
Breast cancer (1)
Colon cancer (1)
Disease free (1)
Hepatocellular carcinoma (1)
Lung adenocarcinoma (1)
Malignant neoplasm of ovary (1)
Neuroblastoma (1)
Non-small cell lung carcinoma (1)
Prostate adenocarcinoma (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (13)
Mass spectrometry (3)
Bottom-up proteomics (2)
Illumina HiSeq 2000 (1)
NextSeq 550, ILLUMINA (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Gel-based experiment (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Axon GenePix 4000B scanning hardware (5)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Q Exactive (1)
Q Exactive HF (1)
5975C Series GC/MSD (Agilent) (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Nuclear Magnetic Resonance (NMR) (1)
Xevo G2-XS QTOF (Waters) (1)

Publication Date

2021 (13)
2022 (12)
2014 (11)
2004 (11)
2024 (7)
2023 (7)
2013 (6)
2008 (6)
2011 (5)
2016 (4)
2012 (4)
2026 (4)
2018 (4)
2010 (3)
2007 (3)
2020 (3)
2005 (2)
2009 (2)
2017 (2)
2019 (2)
2015 (1)
2006 (1)
2025 (1)

CHEBI ID

CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:16015 (2)
CHEBI:17295 (2)
CHEBI:17351 (2)
CHEBI:17895 (2)
CHEBI:18050 (2)
CHEBI:18183 (2)
CHEBI:28842 (2)
CHEBI:30769 (2)
CHEBI:30915 (2)
CHEBI:64561 (2)
CHEBI:64563 (2)
CHEBI:64567 (2)
CHEBI:72737 (2)
CHEBI:10125 (1)
CHEBI:10225 (1)
CHEBI:10284 (1)
CHEBI:116314 (1)
CHEBI:131988 (1)
CHEBI:131993 (1)
CHEBI:132557 (1)
CHEBI:132559 (1)
CHEBI:134594 (1)
CHEBI:136141 (1)
CHEBI:136241 (1)
CHEBI:136498 (1)
CHEBI:137160 (1)
CHEBI:137283 (1)
CHEBI:137590 (1)

Metabolite Name

L-Glutamic acid (2)
L-Glutamine (2)
L-Phenylalanine (2)
L-Tyrosine (2)
(9S,10S)-9,10-dihydroxyoctadecanoate (1)
(S)-3-Hydroxybutyric acid (1)
1-Deoxy-D-xylulose 5-phosphate (1)
11.29 393 257 217 (1)
11.29 397 425 471 (1)
11.77 287 285 (1)
12.62 539 449 359 217 (1)
16.20 456 297 355 (1)
16.26 456 297 355 (1)
2(3H)-Benzothiazolethione (1)
2-Aminonaphthalene (1)
2-Hydroxyhippuric acid (1)
2-Nitrophenol (1)
2-oxoglutaric acid (1)
27-Deoxy-5b-cyprinol (1)
3 beta-Hydroxy-5-cholestenoate (1)
3,4-Dihydroxybenzaldehyde (1)
3-Hexaprenyl-4,5-Dihydroxybenzoic acid (1)
3-Hexaprenyl-4-hydroxybenzoic acid (1)
3-Hydroxyoctanoic acid (1)
3a,7a,12a-Trihydroxy-5b-cholestan-26-al (1)
3b,7a-Dihydroxy-5b-cholanoic acid (1)
3beta,7alpha-Dihydroxy-5-cholestenoate (1)
4-Hydroxybenzoic acid (1)
4-Methyl-2-oxovaleric acid (1)
5-KETE (1)

IsPrivate

False (3)

Submitter Keywords

Immuno-oncology (2)

Modelling Approach

Ordinary differential equation model (3)

Study type

Transcription profiling by array (49)
RNA-seq of coding RNA (3)
Translation profiling (1)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
MicroRNA profiling by array (1)

Release Date

2025 (24)
2023 (23)
2021 (23)
2024 (22)
2022 (21)
2014 (17)
2019 (15)
2018 (15)
2004 (11)
2020 (11)
2013 (10)
2017 (10)
2015 (9)
2016 (8)
2012 (7)
2011 (6)
2010 (6)
2008 (6)
2026 (4)
2007 (3)
2009 (2)
2006 (2)
2005 (1)

Lab affiliation

Department of Life Science, National Taiwan University (3)
Institute of Molecular and Cellular Biology, Department of Life Science, National Taiwan University, Taipei, Taiwan (2)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (2)
BioMedizinisches Centrum Walter-Brendel-Zentrum für Experimentelle Medizin Ludwig-Maximilians-Universität München (1)
Biochemistry and Cell Signalling in Nitric Oxide Group Area of Biochemistry and Molecular Biology. Department of Experimental Biology. University of Jaén /University Institute for Research in Olive Oil and Olive Oils (Spain) (1)
Department of Life Science,National Taiwan University, Taipei, Taiwan (1)
Department of Neuroscience, Memory and Brain Research Center, Baylor College of Medicine, Houston, TX, USA (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Genome and Systems Biology Degree Program, Academia Sinica and National Taiwan University Department of Life Science, National Taiwan University Institute of Molecular and Cellular Biology, National Taiwan University Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University (1)
Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei, Taiwan. (1)
Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences & Peking Union Medical College (1)
Institute of Molecular & Cellular Biology, National Taiwan University, Taiwan (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan. Department of Life Science, National Taiwan University, Taipei, Taiwan. Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan (1)
Institute of molecular and cellular biology (1)

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Identifying vitamin C and RA-regulated genes in the J1 mESCs

It has been demonstrated that vitamin C enhances reprogramming efficiency during inducing pluripotent stem cells, however, the underlying mechanisms are not fully understood. To find the downstream target genes of vitamin C and investigate the mechanism of vitamin C on reprogramming promotion, we pe...

ORGANISM(S): Mus musculus

2014-01-21 | E-GEOD-43405 | biostudies-arrayexpress

Screening of potentially active compounds against rheumatoid arthritis in the Juan-Bi decoction using systems pharmacology and animal experiments.

Not available

S-EPMC11231194 | biostudies-literature

RNA-seq studies using wheat PHYTOCHROME B and PHYTOCHROME C mutants reveal shared and specific functions in the regulation of flowering and shade-avoidance pathways

The phytochromes (PHYs) are a family of photoreceptors which absorb light of red and far-red wavelengths to modulate developmental responses in photosynthetic organisms. We developed knockout mutants of PHYB and PHYC in wheat and performed replicated RNA-seq studies to analyze and compare the regulo...

ORGANISM(S): Triticum turgidum subsp. durum

2016-06-29 | E-GEOD-79049 | biostudies-arrayexpress

Do parenting behaviors modify the way sensation seeking influences antisocial behaviors?

Not available

S-EPMC6747685 | biostudies-literature

Trafficking of Ectopic ATP Synthase via Mitochondrial Fission

Ectopic ATP synthase is a functional onco-protein increases cell proliferation when transported to plasma membrane of cancer cells. Our previous study performed large scale gene silencing screening indicated ER and mitochondrial transport pathways may lead to ectopic ATP synthase expression. Silenci...

ORGANISM(S): Homo sapiens (Human)

2023-05-10 | PXD007036 | Pride

Expression profiles of microRNAs in gastric cancer

We analyzed expression profiles of microRNAs from 22 paired gastric cancer and normal tissues and identified differentially expressed microRNAs. RNA from paired normal and tumor specimens in 22 gastric cancer patients were extracted and treated for microRNA microarray analysis.

ORGANISM(S): Homo sapiens

2011-04-21 | E-GEOD-28700 | biostudies-arrayexpress

Mahajan2008_CardiacActionPotential_Arrhythmias

This a model from the article: A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates. Mahajan A, Shiferaw Y, Sato D, Baher A, Olcese R, Xie LH, Yang MJ, Chen PS, Restrepo JG, Karma A, Garfinkel A, Qu Z, Weiss JN. Biophys J...

2005-01-01 | MODEL1006230048 | BioModels

Leon-Triana2020 - CAR T-cell therapy in B-cell acute lymphoblastic leukaemia

This model is based on the publication: "CAR T cell therapy in B-cell acute lymphoblastic leukaemia: Insights from mathematical models". Odelaisy León-Triana, Soukaina Sabir, Gabriel F. Calvo, Juan Belmonte-Beitia, Salvador Chulián, Álvaro Martínez-Rubio, María Rosa, Antonio Pérez-Martínez, Manuel R...

2024-09-02 | BIOMD0000001011 | BioModels

Immuno-oncology

Developmental Psychopathology in a Racial/Ethnic Minority Group: Are Cultural Risks Relevant?

Not available

S-EPMC5846190 | biostudies-literature

ADCYAP1R1 and asthma in Puerto Rican children.

Not available

S-EPMC3733434 | biostudies-literature

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330 Results

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