Juan Ma M - OmicsDI

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Unknown (869)
Proteomics (52)
Transcriptomics (42)
Genomics (39)
Metabolomics (12)
Models (1)
Genomic (1)

Organisms

Homo sapiens (87)
Mus musculus (13)
Escherichia coli (5)
Schizosaccharomyces pombe (4)
Bos taurus (4)
Oncorhynchus nerka (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Mycobacterium tuberculosis H37Rv_2009 (2)
Chlorocebus aethiops (1)
Streptomyces coelicolor (1)
Rattus norvegicus (1)
Sus scrofa (1)
Danio rerio (1)
Chlorocebus sabaeus (1)
Oryctolagus cuniculus (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Coxiella-like endosymbiont of Rhipicephalus sanguineus complex (1)
Drosophila melanogaster (1)
Equidae (1)
Proboscidea (1)
Xenopus laevis (1)

Organisms

subsurface metagenome (1)

Repository

biostudies-arrayexpress (46)
EGA (34)
pride (34)
iProX (16)
MetaboLights (11)
MassIVE (2)
BioModels (1)
dbGaP (1)
GNPS (1)
ENA (1)

Tissue

Cell culture (12)
Epithelial cell (11)
Breast (2)
Breast cancer cell line (2)
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Blood cancer cell (1)
Bone cancer cell line (1)
Bone marrow (1)
Brain (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Cecum cancer cell line (1)
Cerebrospinal fluid (1)
Cervical cancer cell line (1)
Colonic cancer cell (1)
Colorectal cancer cell line (1)
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Fibroblast of mammary gland (1)
Kidney cancer cell (1)
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Lung (1)
Lymph node (1)
MIN6-N8 cell (1)
Macrophage (1)
Neuroblastoma cell (1)
Neuroblastoma cell line (1)
Non-small cell lung cancer cell (1)
Ovary cancer cell (1)
Ovary cancer cell line (1)
Pancreatic islet (1)

Disease

Breast cancer (4)
Lung cancer (3)
Neuroblastoma (3)
Type 1 diabetes mellitus (3)
Disease free (2)
Cirrhosis (1)
Alzheimer's disease (1)
Asthma (1)
Colon cancer (1)
Down syndrome (1)
Head and neck cancer (1)
Inflammation (1)
Malignant neoplasm of ovary (1)
Non-small cell lung carcinoma (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (34)
Shotgun proteomics (17)
Mass spectrometry (9)
Bottom-up proteomics (5)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-dependent acquisition (4)
Data-independent acquisition (4)
SRM/MRM (2)
Affymetrix 6.0 (1)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
Illumina 1.2M, Illumina 610K Quad, Affymetrix 6.0 (1)
Illumina Genome Analyzer II, Affymetrix snp 6.0, Illumina Genome Analyzer IIx, GPL570, Affymetrix GeneChip Human Genome U133 plus 2.0 (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity purification coupled with mass spectrometry proteomics (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Illumina MiSeq (2)
Liquid Chromatography MS - negative - hilic (2)
Thermo Fisher Scientific (MA, USA) Q Exactive hybrid quadrupole-orbitrap mass spectrometer (1)
Thermo Fisher Scientific (MA, USA) Vanquish Horizon Duo ultra-high performance liquid chromatography (UHPLC) system with an Accucore C18 column with 150 mm length, 2.1 mm internal diameter, and 2.6 µm particle size (1)
LTQ Orbitrap (1)
SolariX (1)
Capillary electrophoresis MS - positive (1)
Exactive (Thermo Scientific) (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Nuclear Magnetic Resonance (NMR) (1)
Q Exactive (1)

Publication Date

2022 (12)
2021 (11)
2010 (10)
2013 (9)
2024 (8)
2014 (8)
2025 (8)
2012 (7)
2026 (7)
2020 (6)
2023 (5)
2018 (5)
2019 (5)
2011 (3)
2016 (2)
2017 (2)
2015 (1)
2008 (1)
2007 (1)

CHEBI ID

CHEBI:15428 (4)
CHEBI:15603 (4)
CHEBI:17750 (4)
CHEBI:27897 (4)
CHEBI:15760 (3)
CHEBI:17191 (3)
CHEBI:17295 (3)
CHEBI:17924 (3)
CHEBI:28044 (3)
CHEBI:28790 (3)
CHEBI:10072 (2)
CHEBI:15741 (2)
CHEBI:15891 (2)
CHEBI:16010 (2)
CHEBI:16015 (2)
CHEBI:16119 (2)
CHEBI:16335 (2)
CHEBI:16347 (2)
CHEBI:16414 (2)
CHEBI:16449 (2)
CHEBI:16675 (2)
CHEBI:16708 (2)
CHEBI:16765 (2)
CHEBI:16811 (2)
CHEBI:16919 (2)
CHEBI:16977 (2)
CHEBI:17053 (2)
CHEBI:17115 (2)
CHEBI:17154 (2)
CHEBI:17203 (2)

Metabolite Name

Glycine (3)
L-Leucine (3)
Creatine (2)
D-Sorbitol (2)
Glycerophosphocholine (2)
Kynurenine (2)
L-Alanine (2)
L-Glutamic acid (2)
L-Glutamine (2)
L-Isoleucine (2)
L-Phenylalanine (2)
L-Proline (2)
L-Serine (2)
L-Tyrosine (2)
L-Valine (2)
N-acetylserotonin (2)
Pyroglutamic acid (2)
Serotonin (2)
Succinic acid (2)
Tryptamine (2)
Tryptophan (2)
Tryptophan (2)
(+)-catechin (1)
(+)-gallocatechin (1)
(+)-trans-epsilon-viniferin (1)
(-)-epicatechin (1)
(-)-epicatechin-3-O-gallate (1)
(-)-epigallocatechin (1)
(-)-epigallocatechin 3-gallate (1)
(2R,3R)-trans-fertaric acid (1)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (1)

First Public Date

2015 (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (24)
RNA-seq of coding RNA (5)
Unknown experiment type (4)
ChIP-seq (4)
Methylation profiling by array (3)
Comparative genomic hybridization by array (2)
Other (2)
ChIP-chip by array (1)
Genotyping by array (1)

Release Date

2023 (109)
2022 (100)
2021 (99)
2025 (94)
2024 (79)
2020 (71)
2019 (64)
2018 (49)
2015 (37)
2017 (36)
2014 (33)
2016 (31)
2013 (27)
2011 (22)
2010 (20)
2012 (18)
2026 (14)
2009 (7)
2008 (3)
2007 (1)
2003 (1)

Lab affiliation

Department of Life Science, National Taiwan University (3)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan (2)
Pacific Northwest National Laboratory (2)
Universitat Internacional de Catalunya, Barcelona, Spain. (2)
1,College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, China 2,Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China (1)
1. Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK 2. Technical University, Berlin 13355, Germany (1)
1.Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom 2.Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Gustav-Meyer-Allee 25, 13355 Berlin, Germany (1)
1Koret School of Veterinary Medicine, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel (1)
Biological Sciences Division, Pacific Northwest National Laboratory (1)
Center for Research and Advanced Studies of the National Polytechnic Institute (CINVESTAV) (1)
College of Animal Science and Technology, Qingdao Agricultural University, China (1)
Departamento de Biología Celular. Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional.Avenida Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Alcaldía Gustavo A. Madero, Ciudad de México, Código Postal 07360. (1)
Department of Experimental Medical Science, Respiratory Immunopharmacology group, Biomedical Centre (BMC), Lund University (1)
Department of Life Science, Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan. (1)
Department of Public Health and Medical Technology, Xiamen Medical College (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Institute of Molecular & Cellular Biology, National Taiwan University, Taiwan (1)
Institute of Molecular and Cellular Biology, Department of Life Science, National Taiwan University, Taipei, Taiwan (1)
Institute of Molecular and Cellular Biology, National Taiwan University (1)
Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan. Department of Life Science, National Taiwan University, Taipei, Taiwan. Department of Electrical Engineering, National Taiwan University, Taipei, Taiwan (1)
Lab Head Proteomics Unit - CNIC - Madrid, Spain (1)
Mass Spectrometry Facility Barts Cancer Institute Lab 1.01 1st floor Queen Mary, University of London John Vane Science Centre, Charterhouse Square, London EC1M 6BQ (1)
Michael Swann Building Max Born Crescent The University of Edinburgh Edinburgh EH9 3BF (1)
National Taiwan University, Institute of Molecular & Cellular Biology (1)
PRBB, Institute of Evolutionary Biology (UPF-CSIC), Dr. Aiguader 88, 8003 Barcelona, Spain Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain Centro Nacional de Análisis Genómico (CNAG), Baldiri i Reixac 4, 08028 Barcelona, Spain Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain (1)
Pathology, Fundación Jiménez Díaz University Hospital Health Research Institute (IIS—FJD, UAM), Madrid 28040, Spain (1)
Professor. F.M. Kirby Neurobiology Center, Boston Children’s Hospital, Boston, MA, USA (1)
Sant Pau Memory Unit, Department of Neurology, Hospital de la Santa Creu i Sant Pau, Biomedical Research Institute Sant Pau (IIB Sant Pau), Universitat Autònoma de Barcelona, Barcelona, Spain (1)
Wellcome Centre for Cell Biology, University of Edinburgh Institute of Biotechnology, Technische Universität Berlin (1)

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Discovery of flat seismic reflections in the mantle beneath the young Juan de Fuca Plate.

Not available

S-EPMC7431579 | biostudies-literature

Museomics Unveil the Phylogeny and Biogeography of the Neglected Juan Fernandez Archipelago Megalachne and Podophorus Endemic Grasses and Their Connection With Relict Pampean-Ventanian Fescues.

Not available

S-EPMC7333454 | biostudies-literature

Recent Carbon Storage and Burial Exceed Historic Rates in the San Juan Bay Estuary Peri-Urban Mangrove Forests (Puerto Rico, United States).

Not available

S-EPMC8809366 | biostudies-literature

Genome-wide mapping of MYCN binding in neuroblastoma cells

To identify the MYCN transcription factor binding sites across the genome, we performed chromatin immunoprecipitation followed by sequencing (ChIP-seq) using anti-MYCN and anti-IgG antibodies on a MYCN-amplified NB cell line, SK-N-BE(2)-C. Identification of MYCN binding in neuroblastoma cells.

ORGANISM(S): Homo sapiens

2016-05-16 | E-GEOD-72640 | biostudies-arrayexpress

Recent Nitrogen Storage and Accumulation Rates in Mangrove Soils Exceed Historic Rates in the Urbanized San Juan Bay Estuary (Puerto Rico, United States).

Not available

S-EPMC8765364 | biostudies-literature

Diet, interleukin-17, and childhood asthma in Puerto Ricans.

Not available

S-EPMC4721241 | biostudies-literature

Islands beneath islands: phylogeography of a groundwater amphipod crustacean in the Balearic archipelago.

Not available

S-EPMC3161010 | biostudies-literature

Consumption of Foods Away from Home Is Associated with Lower Diet Quality Among Adults Living in Puerto Rico.

Not available

S-EPMC9763551 | biostudies-literature

Remodeling of the DNA methylation landscape of CD34+ cells from fetal liver / cord blood upon upon CRISPR mediated t(4:11) rearrangements.

The prognosis of infant B-cell acute lymphoblastic leukemia (iB-ALL) remains dismal, especially in patients harboring the MLL-AF4 (KTM2A-AFF1) rearrangement, which arises prenatally in early hematopoietic stem/progenitor cells (HSPCs). MLL-AF4+ B-ALL shows a bimodal localization of the MLL gene brea...

ORGANISM(S): Homo sapiens

2023-10-29 | E-MTAB-12806 | biostudies-arrayexpress

Epidemiological study on gender bias and low-value practices in primary care: a study protocol.

Not available

S-EPMC10174026 | biostudies-literature

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