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TranscriptomicsTranscriptomic study (RNAseq) of Brachypodium distachyon ecotypes Bd21 and Bd2-3 under submergence stress
Purpose: The goal of this study is to compare the transcriptomes expressed during submergence stress of two Brachypodium distachyon ecotypes with contrasting survival under this stress. Bd21 is a submergence sensitive ecotype with EC50 of 2.5 days and Bd2-3 is a tolerant ecotype with EC50 of 4 days....
ORGANISM(S): Brachypodium distachyon 
2016-01-04 | E-GEOD-74222 | biostudies-arrayexpress
TranscriptomicsDynamics of mRNA abundance and translation in response to darkness and reillumination
Gene expression analysis of 14d-old Arabidopsis seedlings exposed to 1h darkness and 10 min reillumination after 1 h darkness to evaluate the regulation of gene expression at the level of translation. 12 samples, 3 conditions (1h light control, 1 h darkness treatment, 1 h darkness plus 10 min reillu...
ORGANISM(S): Arabidopsis thaliana 
2012-03-30 | E-GEOD-34231 | biostudies-arrayexpress
TranscriptomicsArabidopsis cold regulated transcriptome, translatome and CSP1 RNA regulon
Transcriptome, translatome, and CSP1 RNA regulon analysis of 25-d-o Arabidopsis rosettes exposed to 12h low temperature (4C) treatment. 38 samples, 3 genotypes (35S:HF-RPL18, 35S:AtCSP1-FH#11, and atcsp1-1), 2 conditions (non-stress and cold), 3 RNA pools (total, polysomal, and CSP1 associated mRNAs...
ORGANISM(S): Arabidopsis thaliana 
2013-03-31 | E-GEOD-38030 | biostudies-arrayexpress
TranscriptomicsHigh-resolution mapping of ribosome footprints from Arabidopsis thaliana
Post-transcriptional gene regulation plays a significant role in the response to oxygen deprivation. Here, we utilized advances in next-generation sequencing technology to examine changes in transcriptional control, mRNA loading on to polysome, and regulation of ribosome activity during mRNA transla...
ORGANISM(S): Arabidopsis thaliana 
2013-11-23 | E-GEOD-50597 | biostudies-arrayexpress
TranscriptomicsTranslatome of floral buds, in vivo pollinated pollen tubes, and in vitro cultured pollen grains/tubes from LAT52-HF-RPL18 Arabidopsis
Little is known of the transcriptome of in vivo-grown pollen tubes, due to the difficulty of collection of pollen tubes elongating within the maternal gynoecium.We obtained the mRNAs undergoing translation (the translatome) of in vivo-grown pollen tubes from self-pollinated gynoecia of Arabidopsis t...
ORGANISM(S): Arabidopsis thaliana 
2014-02-01 | E-GEOD-43299 | biostudies-arrayexpress
TranscriptomicsExpression analysis of both total and polysomal mRNAs under drought, salt and cold stress conditions
Using 3′-tiling microarray covering the rice genes, we carried out genome-wide expression analyses of total and polysome-fractionated samples treated with drought, salt and cold at 2-week-old rice leaves. compared to non-treated negative control (NC) samples. Our study is the first report which eluc...
ORGANISM(S): Oryza sativa 
2012-03-02 | E-GEOD-32065 | biostudies-arrayexpress
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