K18 - OmicsDI

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Transcriptomics (4355)
Unknown (618)
Genomics (204)
Proteomics (17)
Other (1)

Organisms

Homo sapiens (1065)
Mus musculus (815)
Arabidopsis thaliana (277)
Drosophila melanogaster (137)
Rattus norvegicus (130)
Saccharomyces cerevisiae (110)
Escherichia coli (84)
Thermus thermophilus HB8 (71)
Candida albicans (61)
Streptococcus pneumoniae D39 (58)
Caenorhabditis elegans (50)
Schizosaccharomyces pombe (39)
Sus scrofa (38)
Oncorhynchus mykiss (37)
Bos taurus (32)
Bacillus subtilis (27)
Danio rerio (27)
Gallus gallus (26)
Pseudomonas putida (25)
Escherichia coli str. K-12 substr. MG1655 (23)
Sinorhizobium meliloti (21)
Mycobacterium tuberculosis (19)
Staphylococcus aureus (19)
Plasmodium falciparum (19)
Escherichia coli K-12 (19)
Macaca mulatta (17)
Streptococcus pneumoniae (17)
Salmonella enterica subsp. enterica serovar Typhimurium (16)
Zea mays (15)
Streptococcus pyogenes (14)

Organisms

Mus musculus (46)
groundwater metagenome (13)
hot springs metagenome (10)
Homo sapiens (8)
tidal flat metagenome (3)
lake water metagenome (3)
freshwater metagenome (2)
Klebsiella pneumoniae (2)
marine metagenome (2)
microbial mat metagenome (2)
unidentified (2)
soil metagenome (2)
Aminicenantes bacterium SCGC AAA252-K18 (1)
Oxalobacteraceae bacterium JGI 0001003-K18 (1)
Aigarchaeota archaeon (1)
Halomonadaceae bacterium (1)
Thaumarchaeota archaeon SCGC AAA282-K18 (1)
Chloroflexota bacterium (1)
Betaproteobacteria bacterium (1)
Pseudomonas citrullilanati (1)
Helicoverpa assulta (1)
salt lake metagenome (1)
Klebsiella quasipneumoniae (1)
Leuconostoc mesenteroides (1)
Mesocricetus auratus (1)
Mus musculus musculus (1)
Aedes aegypti (1)
wetland metagenome (1)
mouse metagenome (1)
aquatic metagenome (1)

Repository

biostudies-arrayexpress (4401)
ENA (145)
geo (39)
EGA (6)
pride (6)
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iProX (4)
jPOST (1)

Tissue

Lung (2)
Dental pulp stem cell (1)
Mesenchymal stem cell of umbilical cord (1)
Mesenchymal stem cell (1)
Mesenchymal stem cell of the bone marrow (1)
Bone marrow (1)
Blood serum (1)
Blood plasma (1)
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Cell culture (1)

Disease

Normal (37)
Melanoma (6)
Breast cancer (5)
Neuroblastoma (5)
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Hypertension (2)
Mitochondrial complex I deficiency (2)
Squamous Cell Carcinoma (2)
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Rheumatoid arthritis (2)
Colorectal cancer (2)
Squamous cell carcinoma (2)
Hyperglycaemic (2)
Papillary thyroid carcinoma (2)
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Reference (2)
Hepatocellular carcinoma (2)
Adenocarcinoma (2)
Ovarian tumor (2)
Wilms tumour (2)
Multiple sclerosis (1)
Tumor bearing (1)
Aortic aneurysm (1)
Amyotrophic lateral sclerosis (1)
Lymphoblastic leukemia (1)
Benign nevi (1)
High bone mineral density (1)
Early-life seizures (1)

Technology Type

Mass Spectrometry (6)
Gel-based experiment (2)
Shotgun proteomics (2)
Data-independent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (88)
Illumina NovaSeq 6000 (84)
Illumina HiSeq 2500 (54)
NextSeq 500 (51)
Illumina HiSeq 4000 (39)
Scanning hardware (27)
NextSeq 550 (18)
Illumina MiSeq (17)
Axon- GenePix4000B (13)
GenePix 4000B [Axon Instruments] (13)
GenePix 4000A [Axon Instruments] (11)
Affymetrix Fluidics Station 400 (11)
ScanArray 4000 [PerkinElmer] (10)
Illumina Genome Analyzer II (10)
Axon GenePix 4000B scanning hardware (9)
G2565BA DNA microarray scanner [Agilent] (8)
ScanArray 4000XL [PerkinElmer] (8)
HiSeq X Ten (8)
ScanArray 5000 [PerkinElmer] (7)
Illumina Genome Analyzer IIx (7)
ScanArray Express HT [PerkinElmer] (7)
ScanArray Lite [PerkinElmer] (6)
GenePix Personal 4100A [Axon Instruments] (5)
G2565AA DNA microarray scanner [Agilent] (5)
BAS-5000 [FUJIFILM] (5)
NextSeq 2000 (5)
MinION (5)
Illumina HiSeq 1500 (5)
ScanArray scanning hardware (4)
G2500A Hewlett Packard (4)

Publication Date

2010 (704)
2013 (448)
2012 (409)
2011 (406)
2014 (375)
2015 (329)
2008 (319)
2009 (251)
2007 (201)
2016 (187)
2006 (119)
2022 (107)
2005 (92)
2021 (69)
2004 (64)
2023 (54)
2018 (52)
2017 (47)
2024 (46)
2020 (44)
2026 (40)
2019 (39)
2025 (36)
2003 (14)
2002 (1)

First Public Date

2024 (23)
2023 (19)
2025 (17)
2022 (16)
2026 (14)
2021 (14)
2017 (11)
2018 (10)
2020 (9)
2014 (5)
2019 (3)
2013 (3)
2016 (1)

Classification

bacteria (4)

Study type

Transcription profiling by array (3047)
RNA-seq of coding RNA (731)
RNA-seq of non coding RNA (144)
Unknown experiment type (70)
Other (46)
Transcription profiling by tiling array (38)
ChIP-seq (37)
RNA-seq of total RNA (31)
RNA-seq of coding RNA from single cells (24)
ChIP-chip by tiling array (22)
Comparative genomic hybridization by array (22)
Animal - High-throughput sequencing (20)
Cell line - High-throughput sequencing (14)
Transcription profiling by RT-PCR (14)
ChIP-chip by array (9)
CLIP-seq (9)
MicroRNA profiling by array (9)
Methylation profiling by high throughput sequencing (9)
RNAi profiling by array (8)
Genotyping by array (7)
High-throughput sequencing (6)
Methylation profiling by array (6)
Cell line - Two-color microarray (5)
MicroRNA profiling by high throughput sequencing (5)
RIP-seq (5)
Human - High-throughput sequencing (4)
Plant - High-throughput sequencing (4)
DNA-seq (4)
Transcription profiling by SAGE (3)
GRO-seq (2)

Release Date

2010 (711)
2013 (460)
2012 (415)
2011 (411)
2014 (379)
2015 (337)
2008 (321)
2009 (253)
2022 (238)
2007 (202)
2016 (197)
2023 (161)
2021 (135)
2024 (129)
2006 (120)
2025 (95)
2005 (94)
2018 (66)
2004 (65)
2020 (61)
2017 (52)
2019 (51)
2026 (42)
2003 (16)
2002 (3)
2001 (2)
1999 (1)
1998 (1)
1997 (1)

Lab affiliation

State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (1)
Deparment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Republic of Korea1Deparment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Republic of Korea (1)
Department of Biochemistry and Cell Biology, Boston University Chobanian and Avedisian School of Medicine, Boston, MA 02118, USA National Emerging Infectious Diseases Laboratories (NEIDL), Boston University, Boston, MA 02118, USA (1)
Gonçalo Moniz Institute, Oswaldo Cruz Foundation (FIOCRUZ), Salvador, Brazil Center for Biotechnology and Cell Therapy, São Rafael Hospital, Salvador, Brazil D'Or Institute for Research and Education (IDOR), Salvador, Brazil (1)
SIGNATOPE GmbH, Reutlingen, Germany (1)
Department of Physical Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland (1)

Tags

xref:PubMed:37914927 (4)
pathogen (4)
pathogen:bacterium (4)
xref:PubMed:37907741 (2)
xref:PubMed:38582079 (2)
xref:PubMed:38092883 (2)
covid19 (2)
xref:PubMed:38585846 (1)
xref:PubMed:41692789 (1)
xref:PubMed:34185704 (1)
xref:PubMed:36373096 (1)
xref:PubMed:36005818 (1)
xref:PubMed:25330770 (1)
xref:PubMed:34812647 (1)
xref:PubMed:36357440 (1)
xref:PubMed:34772941 (1)
xref:PubMed:32839612 (1)
xref:PubMed:27043296 (1)
xref:PubMed:41848341 (1)
xref:PubMed:38055802 (1)
xref:PubMed:35118466 (1)
xref:PubMed:37112926 (1)
xref:PubMed:35922434 (1)
xref:PubMed:36849513 (1)
xref:PubMed:39189801 (1)
xref:PubMed:34010142 (1)
xref:PubMed:39396994 (1)
xref:PubMed:39019868 (1)
xref:PubMed:33947848 (1)
xref:PubMed:39580470 (1)

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Klebsiella quasipneumoniae strain:K18-45

Klebsiella quasipneumoniae strain:K18-45 Genome sequencing

PRJNA869910 | ENA

Pseudomonas citrullilanati strain:K18 | isolate:K18

Pseudomonas citrullilanati strain:K18 | isolate:K18 Genome sequencing

PRJNA1199378 | ENA

mouse metagenome strain:K18-hACE2

Mouse metagenome strain:K18-hACE2 Raw sequence reads

PRJNA722991 | ENA

Thaumarchaeota archaeon SCGC AAA282-K18

Thaumarchaeota archaeon SCGC AAA282-K18

PRJNA190793 | ENA

Oxalobacteraceae bacterium JGI 0001003-K18

Oxalobacteraceae bacterium JGI 0001003-K18

PRJNA176050 | ENA

Aminicenantes bacterium SCGC AAA252-K18

candidate division OP8 bacterium SCGC AAA252-K18

PRJNA192405 | ENA

Functional Heterogeneity Analysis of Mesenchymal Stem Cell Lines and their Therapeutic Potential in the K18-hACE2 Mouse Model of SARS-CoV-2 Infection

Despite many years of investigation into mesenchymal stem cells (MSCs) and their potential for treating inflammatory conditions such as COVID-19, clinical outcomes remain variable due to factors like donor variability, different tissue sources, and diversity within MSC populations. Variations in MSC...

ORGANISM(S): Homo sapiens (Human)

2025-05-07 | PXD051984 | Pride

Covid-19 k18-hace2 Immunomodulation Mesenchymal stem cells heterogeneity

Mus musculus musculus strain:K18-hACE2 | breed:C57BL/6

Effect of Mac1 deletion mutant of SARS-CoV-2 infection of K18-hACE2 mice

PRJNA928501 | ENA

Klebsiella pneumoniae strain:K18/014

Klebsiella pneumoniae strain:K18/014 Genome sequencing

PRJNA592628 | ENA

Klebsiella pneumoniae strain:K18/012-B

Klebsiella pneumoniae strain:K18/012-B Genome sequencing

PRJNA592820 | ENA

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