Ke Y Y - OmicsDI

Show results for

Unknown (7261)
Proteomics (247)
Genomics (85)
Metabolomics (85)
Transcriptomics (65)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (194)
Mus musculus (67)
Rattus norvegicus (10)
Escherichia coli (7)
Gallus gallus (6)
Severe acute respiratory syndrome coronavirus 2 (5)
Bos taurus (2)
Drosophila melanogaster (2)
Murinae (1)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Gluconobacter oxydans 621H (1)
Brassica rapa subsp. chinensis (1)
Bacillus cereus (1)
Bacillus anthracis (1)
Zea mays (1)
Streptococcus pneumoniae (1)
Mycobacterium tuberculosis H37Rv (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Arabidopsis thaliana (1)
Acidobacteriaceae bacterium A2-4c (1)
Bacillus subtilis subsp. subtilis str. 168 (1)
Glaesserella parasuis (1)
Hordeum vulgare (1)
Human CSF-associated densovirus (1)
Macaca fascicularis fascicularis (1)
Nicotiana benthamiana (1)
Nicotiana tabacum (1)
Oryza sativa Japonica Group (1)
Solanum lycopersicum (1)

Repository

pride (123)
biostudies-arrayexpress (81)
EGA (69)
MassIVE (67)
iProX (54)
GNPS (49)
MetaboLights (36)
BioModels (1)
PanoramaPublic (1)
PAXDB (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (17)
Blood plasma (12)
Epithelial cell (12)
Brain (8)
Urine (8)
Blood cell (3)
Blood serum (3)
Liver (3)
Plant cell (3)
Skin (3)
Testis (3)
Bone marrow (2)
Cell suspension culture (2)
Early embryonic cell (2)
Fibroblast (2)
Flower (2)
Hepatocyte (2)
Keratinocyte (2)
Kidney (2)
Leaf (2)
Lung (2)
Myocardium (2)
Pancreas (2)
Saliva (2)
Skeletal muscle (2)
Brain (1)
B cell (1)
Bile (1)
HEK-293T cell (1)
HeLa cell (1)

Disease

Disease free (4)
Acute leukemia (2)
Breast cancer (2)
Colon cancer (2)
Disease (2)
Liver cancer (2)
Pulmonary neuroendocrine tumor (2)
Type 2 diabetes mellitus (2)
Locally advanced rectal cancer (1)
Age related macular degeneration (1)
Bladder transitional cell carcinoma (1)
Brain cancer (1)
COVID-19 (1)
Cervix carcinoma (1)
Childhood extraosseous osteosarcoma (1)
Cholangiocarcinoma (1)
Chronic bronchitis (1)
Chronic kidney disease (1)
Coronavirus infectious disease (1)
Cystic fibrosis (1)
Embryonal rhabdomyosarcoma (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Inflammation (1)
Influenza (1)
Lung cancer (1)
Lung carcinoma (1)
Malignant mesothelioma (1)
Melanoma (1)
Neuroblastoma (1)

Technology Type

Mass Spectrometry (123)
Shotgun proteomics (66)
Mass spectrometry (30)
Bottom-up proteomics (25)
Data-dependent acquisition (12)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Gel-based experiment (6)
Illumina HiSeq 2000 (4)
Mass spectrometry assay (4)
Data-independent acquisition (4)
Top-down proteomics (4)
Affinity purification coupled with mass spectrometry proteomics (3)
SWATH MS (3)
Proteogenomics (2)
Affymetrix 6.0 (1)
Illumina HiSeq 2000, Illumina_2.5M (1)
Illumina HiSeq 2500, Illumina MiSeq, NextSeq 500, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
NMR spectroscopy assay (1)
Affinity proteomics (1)
DiaPASEF (1)
Mass spectrometry imaging (1)

Instrument Platform

LTQ Orbitrap Velos (46)
GC-MS (21)
GC MS (12)
Liquid Chromatography MS - positive - reverse phase (10)
Q Exactive (9)
LTQ Orbitrap (8)
Q Exactive Plus (6)
Liquid Chromatography MS - negative - reverse phase (6)
Orbitrap Fusion Lumos (5)
Liquid Chromatography MS - negative - hilic (4)
TripleTOF 5600 (3)
Liquid Chromatography MS - Alternating (LC-MS (Alternating)) (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina NovaSeq 6000 (2)
Illumina HiSeq 4000 (2)
NextSeq 500 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
Q Exactive HF-X (2)
Liquid Chromatography MS - alternating - hilic (2)
454 GS 20 (1)
Illumina HiSeq 2000 (1)
6110 Quadrupole LC/MS (1)
Agilent GC-MS (1)
LTQ Orbitrap Velos Pro (1)
Agilent GC/MSD 5975C (1)
Exactive (1)
LTQ Velos (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Orbitrap Exploris 480 (1)
TripleTOF 5600+ (1)

Publication Date

2016 (47)
2023 (46)
2024 (37)
2021 (35)
2022 (25)
2026 (25)
2019 (24)
2020 (24)
2017 (23)
2025 (22)
2014 (21)
2015 (20)
2018 (20)
2012 (12)
2013 (8)
2010 (8)
2011 (6)
2009 (3)
2007 (2)
2008 (1)
2005 (1)
2004 (1)

UNIPROT ID/AC

P07321 (1)
P14753 (1)
1433T_RABIT (1)
2A5B_RABIT (1)
2A5D_RABIT (1)
2A5E_RABIT (1)
2A5G_RABIT (1)
2ABA_RABIT (1)
2ABB_RABIT (1)
3HIDH_RABIT (1)
4F2_RABIT (1)
9986.ENSOCUP00000000042 (1)
9986.ENSOCUP00000000055 (1)
9986.ENSOCUP00000000070 (1)
9986.ENSOCUP00000000109 (1)
9986.ENSOCUP00000000131 (1)
9986.ENSOCUP00000000206 (1)
9986.ENSOCUP00000000207 (1)
9986.ENSOCUP00000000305 (1)
9986.ENSOCUP00000000435 (1)
9986.ENSOCUP00000000441 (1)
9986.ENSOCUP00000000514 (1)
9986.ENSOCUP00000000533 (1)
9986.ENSOCUP00000000568 (1)
9986.ENSOCUP00000000651 (1)
9986.ENSOCUP00000000725 (1)
9986.ENSOCUP00000000758 (1)
9986.ENSOCUP00000000909 (1)
9986.ENSOCUP00000000919 (1)
9986.ENSOCUP00000000954 (1)

ENSEMBL ID

ENSMUSG00000006235 (1)
ENSMUSG00000029711 (1)
ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:15354 (12)
CHEBI:15891 (11)
CHEBI:16708 (11)
CHEBI:17596 (11)
CHEBI:16704 (10)
CHEBI:16737 (10)
CHEBI:17562 (10)
CHEBI:18186 (10)
CHEBI:16811 (9)
CHEBI:16919 (9)
CHEBI:17368 (9)
CHEBI:18132 (9)
CHEBI:18211 (9)
CHEBI:24898 (9)
CHEBI:26271 (9)
CHEBI:15428 (8)
CHEBI:15676 (8)
CHEBI:15724 (8)
CHEBI:16027 (8)
CHEBI:16235 (8)
CHEBI:16335 (8)
CHEBI:16449 (8)
CHEBI:16610 (8)
CHEBI:17533 (8)
CHEBI:17568 (8)
CHEBI:17992 (8)
CHEBI:18237 (8)
CHEBI:22653 (8)
CHEBI:28044 (8)
CHEBI:28865 (8)

Metabolite Name

AMP (5)
Adenine (5)
Alanine (5)
Arginine (5)
Choline (5)
Citrate (5)
Citrulline (5)
Creatinine (5)
Isoleucine (5)
Leucine (5)
Lysine (5)
Methionine (5)
Phenylalanine (5)
Proline (5)
Succinate (5)
Taurine (5)
Tyrosine (5)
Valine (5)
Allantoin (4)
Alpha-tocopherol (4)
Asparagine (4)
Carnitine (4)
Choline (4)
Creatine (4)
Creatine (4)
Hypoxanthine (4)
Inosine (4)
Spermidine (4)
Taurine (4)
Uridine (4)

IsPrivate

False (1)

First Public Date

2019 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (11)
ChIP-seq (8)
Methylation profiling by high throughput sequencing (7)
ChIP-chip by array (3)
Unknown experiment type (2)
Transcription profiling by RT-PCR (2)
ATAC-seq (2)
Other (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (892)
2025 (852)
2023 (811)
2021 (804)
2024 (729)
2020 (575)
2019 (462)
2018 (397)
2017 (355)
2016 (278)
2015 (275)
2014 (201)
2026 (133)
2012 (132)
2013 (131)
2011 (100)
2010 (70)
2009 (64)
2008 (24)
2007 (18)
2006 (11)
2004 (8)
2005 (6)
2003 (4)
1998 (3)
2001 (2)
2000 (2)
2002 (1)
1999 (1)
1997 (1)

Lab affiliation

J. Craig Venter Institute, Rockville, MD 20850 (7)
Pacific Northwest National Laboratory (5)
Univeristy of Georgia (5)
Peking University (3)
USDA ARS; Boyce Thompson Institute; Cornell University (3)
Center for Stem Cell Biology and Tissue Engineering, Key Laboratory for Stem Cells and Tissue Engineering, Ministry of Education, Sun Yat-sen University, Guangzhou, Guangdong, China. (2)
Department of Biochemistry UT Southwestern Medical Center (2)
Department of Biochemistry, University of Texas Southwestern Medical Center, Dallas, 75390, TX, USA (2)
Department of Pathophysiology, Key Laboratory of Ministry of Education for Neurological Disorders, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (2)
Department of Structural Biology and Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (2)
The University of Melbourne (2)
Yale University Department of Chemistry (2)
1Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh 2Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, 13355, Germany (1)
Aalborg university (1)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
Beijing Key Laboratory of DNA Damage Response and College of Life Science, Capital Normal University, Beijing 100048, China (1)
Biological mass spectrometry and proteomics group, Department of Chemistry High-resolution mass spectrometry platform, Core research facilities Guangdong provincial key laboratory for cell microenvironment and disease research Southern University of Science and Technology (SUSTech) 403, 1st research building, 1088 Xueyuan Rd., Nanshan, Shenzhen (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Padualaan 8, Utrecht 3584 CH, the Netherlands and Netherlands Proteomics Center, Padualaan 8, Utrecht 3584 CH, the Netherlands (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
Cell Biology Department, Harvard Medical School (1)
Chair in Infection and Global Health, Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, (1)
DTU Bioengineering (1)
Dana Farber Cancer Institute Harvard Medical School Boston, Ma (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 | 04318 Leipzig Telefon +49 341 235 4767 | Fax +49 341 235 450823 (1)
Department of Andrology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, 510080, China (1)
Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA (1)
Department of Cell Biology, Harvard Medical School, Boston, USA (1)
Department of Cellular and Molecular Medicine, Faculty of Medicine, University of Ottawa, Ottawa, Ontario, Canada. (1)
Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON, Canada. (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)