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GenomicsSox10 Binding Analysis in the Central and Peripheral Nervous System
ChIP-seq of Sox10 in spinal cord and sciatic nerve 2 independent Sox10 ChIP samples each for spinal cord (CNS) and sciatic nerve (PNS), with respective inputs
ORGANISM(S): Rattus norvegicus 
2015-04-01 | E-GEOD-64703 | biostudies-arrayexpress
UnknownDebiased personalized gene coexpression networks for population-scale scRNA-seq data.
Not available
S-EPMC10519377 | biostudies-literature
UnknownFreeHi-C simulates high-fidelity Hi-C data for benchmarking and data augmentation.
Not available
S-EPMC8136837 | biostudies-literature
UnknownCNV-guided multi-read allocation for ChIP-seq.
Not available
S-EPMC4184254 | biostudies-literature
UnknownSURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins.
Not available
S-EPMC7291511 | biostudies-literature
UnknownNormalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D.
Not available
S-EPMC9575231 | biostudies-literature
TranscriptomicsRho directs widespread termination of intragenic and stable RNA transcription
The transcription termination factor Rho is a global regulator of RNA polymerase (RNAP). Although individual Rho-dependent terminators have been studied extensively, less is known about the sites of RNAP regulation by Rho on a genome-wide scale. Using chromatin immunoprecipitation and microarrays (...
ORGANISM(S): Escherichia coli 
2010-05-18 | E-GEOD-16562 | biostudies-arrayexpress
UnknownFreeHi-C spike-in simulations for benchmarking differential chromatin interaction detection.
Not available
S-EPMC7855360 | biostudies-literature
TranscriptomicsExpression data of sleeping, waking, and sleep deprived in adult heterozygous Cnp M-bM-^@M-^S eGFP-L10a mice
Transcriptomic studies revealed that hundreds of mRNAs show differential expression in the brains of sleeping versus awake rats, mice, flies, and sparrows. Although these results have offered clues regarding the molecular consequences of sleep and sleep loss, their functional significance thus far h...
ORGANISM(S): Mus musculus 
2013-08-20 | E-GEOD-48369 | biostudies-arrayexpress
UnknownSystematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.
Not available
S-EPMC4765064 | biostudies-literature
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