Keller A A - OmicsDI

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Unknown (5659)
Proteomics (397)
Transcriptomics (221)
Genomics (61)
Metabolomics (21)
Models (4)
Genomic (2)

Organisms

Homo sapiens (89)
Mus musculus (67)
Arabidopsis thaliana (11)
Solenopsis invicta (10)
Ovis aries (9)
Zea mays (6)
Triticum aestivum (6)
Saccharomyces cerevisiae (6)
Caenorhabditis elegans (4)
Sus scrofa (4)
Schizosaccharomyces pombe (3)
Enterococcus faecium (3)
Ostreococcus tauri (2)
Pseudomonas aeruginosa (2)
Candida albicans (2)
Rattus norvegicus (2)
Bos taurus (2)
Mammalia (1)
Cardiocondyla obscurior (1)
Prochlorococcus marinus subsp. pastoris str. CCMP1986 (1)
Aspergillus flavus (1)
Alexandrium fundyense (1)
Shewanella oneidensis (1)
Blumeria graminis (1)
Sorghum bicolor (1)
Aspergillus fumigatus (1)
Clostridium acetobutylicum (1)
Emiliania huxleyi (1)
Hordeum vulgare (1)
Corynebacterium glutamicum ATCC 13032 (1)

Organisms

Mus musculus (11)
Solenopsis invicta (9)
Ovis aries (7)
Homo sapiens (3)
Aspergillus fumigatus (2)
Phytophthora nicotianae INRA-310 (1)
Xenopus laevis (1)
Sorghum bicolor (1)
Zea mays (1)
soil metagenome (1)

Repository

pride (377)
biostudies-arrayexpress (228)
ENA (41)
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geo (10)
EGA (6)
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GNPS (3)
dbGaP (2)
jPOST (1)

Tissue

Cell culture (76)
Brain (29)
Epithelial cell (23)
Heart (13)
Permanent cell line cell (12)
Skin (10)
Blood (9)
Early embryonic cell (9)
Liver (9)
Cell suspension culture (8)
Fibroblast (8)
HeLa cell (8)
Keratinocyte (8)
B cell (7)
Blood cell (7)
Kidney (7)
Plant cell (7)
Bone marrow (6)
Whole body (6)
Embryonic stem cell (5)
T cell (5)
Leaf (4)
Blood plasma (3)
Breast (3)
Embryo (3)
Hepatocyte (3)
Hippocampus (3)
Neuron (3)
Primary cell (3)
Skeletal muscle (3)

Disease

Disease free (11)
Wounds and Injuries (9)
Breast cancer (7)
Multiple myeloma (6)
Acute leukemia (4)
Cardiovascular system disease (4)
Lymphoma (4)
Alzheimer's disease (3)
Cervix carcinoma (3)
Colon cancer (3)
Type 2 diabetes mellitus (3)
Diabetes mellitus (2)
Myocardial ischemia (2)
Amyotrophic lateral sclerosis (1)
Ataxia telangiectasia (1)
Atopic dermatitis (1)
Basal cell carcinoma (1)
COVID-19 (1)
Chronic myeloid leukemia (1)
Crohn's disease (1)
Cystinosis (1)
Drug dependence (1)
Epilepsy (1)
Fanconi anemia complementation group A (1)
Glaucoma (1)
Glioblastoma (1)
Lewy body dementia (1)
Parkinson's disease (1)
Plasmodium falciparum malaria (1)
Trypanosomiasis (1)

Technology Type

Mass Spectrometry (377)
Shotgun proteomics (179)
Affinity purification coupled with mass spectrometry proteomics (54)
Bottom-up proteomics (51)
Gel-based experiment (38)
Data-dependent acquisition (33)
Chemical cross-linking coupled with mass spectrometry proteomics (26)
Data-independent acquisition (23)
SRM/MRM (17)
Mass spectrometry (15)
SWATH MS (14)
Top-down proteomics (9)
Mass spectrometry assay (3)
All-ion fragmentation (2)
HDMSE (2)
Illumina HiSeq 2000 (1)
MSE (1)
Mass spectrometry imaging (1)
Metaproteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Q Exactive (6)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (5)
Illumina HiSeq 4000 (4)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative - reverse phase (3)
Illumina HiSeq 3000 (2)
LTQ Orbitrap Elite (2)
Orbitrap Exploris 480 (2)
10x Genomics Chromium (1)
BD FACS Aria SORP (1)
GenePix 4100A (Molecular Device) (1)
Agilent DNA Microarray Scanner Model #G2565BA (1)
Affymetix Gene Titan (1)
Affymetrix Gene Titan (1)
Agilent 2100 Bioanalyser, RNA 6000 Nano Kit chips (Agilent Technologies). NanoDrop® ND-1000 (Saveen&Werner). (1)
NanoDrop® ND-1000 (Saveen&Werner). (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
ACQUITY UPLC I-Class (1)
Dionex UltiMate 3000 Rapid Separation nanoLC coupled to the Orbitrap Elite Mass Spectrometer (1)
LTQ Orbitrap Velos (1)
LTQ Velos (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 240 (1)
Orbitrap Fusion (1)
Q Exactive HF (1)

Publication Date

2023 (69)
2022 (64)
2025 (51)
2024 (41)
2021 (41)
2020 (40)
2026 (40)
2015 (37)
2019 (34)
2014 (34)
2013 (34)
2010 (32)
2012 (31)
2016 (29)
2018 (22)
2011 (18)
2017 (14)
2008 (9)
2005 (7)
2009 (6)
2007 (3)
2006 (2)

UNIPROT ID/AC

P05067 (1)

CHEBI ID

CHEBI:22660 (3)
CHEBI:16449 (3)
CHEBI:28044 (3)
CHEBI:16359 (3)
CHEBI:17368 (3)
CHEBI:30769 (3)
CHEBI:24149 (2)
CHEBI:33404 (2)
CHEBI:28757 (2)
CHEBI:37684 (2)
CHEBI:16802 (2)
CHEBI:48928 (2)
CHEBI:18261 (2)
CHEBI:33942 (2)
CHEBI:15887 (2)
CHEBI:16244 (2)
CHEBI:17376 (2)
CHEBI:4047 (2)
CHEBI:28834 (2)
CHEBI:340824 (2)
CHEBI:17270 (2)
CHEBI:18237 (2)
CHEBI:88003 (2)
CHEBI:17148 (2)
CHEBI:26984 (2)
CHEBI:17822 (2)
CHEBI:17151 (2)
CHEBI:15428 (2)
CHEBI:17234 (2)
CHEBI:63836 (1)

Metabolite Name

Uracil (3)
Choline (3)
L-Phenylalanine (3)
TAG 59:12 (15:0/22:6/22:6) (2)
TAG 55:7 (15:0/18:1/22:6) (2)
TAG 55:6 (15:0/18:0/22:6) (2)
TAG 55:1 (15:0/18:1/22:0) (2)
TAG 51:5 (15:0/18:1/18:4) (2)
TAG 51:4 (15:0/18:1/18:3) (2)
TAG 51:3 (15:0/18:1/18:2) (2)
TAG 51:2 (15:0/18:1/18:1) (2)
TAG 49:1 (15:0/16:0/18:1) (2)
TAG 48:1 (14:0/16:0/18:1) (2)
TAG 48:1 (15:0/15:0/18:1) (2)
TAG 47:1 (14:0/15:0/18:1) (2)
4-Aminobenzoic acid (2)
Galactonic acid (2)
Phosphate (2)
2'-deoxyadenosine 5'-monophosphate (2)
Ribose (2)
Maltose (2)
2-Aminoadipic acid (2)
Xanthosine (2)
Thymine (2)
Lysine (2)
Cytidine (2)
Cystine (2)
3-phosphoglycerate (2)
Valine (2)
Palmitic acid (2)

First Public Date

2014 (15)
2024 (7)
2019 (5)
2020 (4)
2021 (2)
2018 (2)
2013 (2)
2022 (1)
2017 (1)
2016 (1)
2015 (1)

Modelling Approach

Mathematical model (2)
Ordinary differential equation model (2)

Lab affiliation

Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (8)
Bioplatforms Australia (7)
Department of Neurology and Neurological Sciences, Stanford University, Stanford, CA, USA (6)
Department of Genome Sciences University of Washington USA (5)
IMSB, ETH Zurich (5)
ETHZ IMSB (4)
Institute of Molecular Systems Biology, Department of Biology, ETH Zurich, Zurich, Switzerland (4)
Novartis Inst. for BioMedical Research (4)
DTU Bioengineering (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland (3)
Department of Biology, Institute of Molecular Systems Biology, ETH Zürich, Zürich, Switzerland Faculty of Science, University of Zürich, Zürich, Switzerland (3)
Department of Biotechnology and Biomedicine, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark (3)
Department of Genome Sciences, University of Washington (3)
Department of Genome Sciences, University of Washington, Seattle (3)
ETH Zurich, Department of Biology, Institute of Molecular Health Sciences (3)
IBCII, Goethe University Frankfurt, Germany, Medical School (3)
Institute of Biochemistry (3)
Technical University of Denmark (3)
University of Washington, Department of Genome Sciences (3)
CNIC (2)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Cellular Neurophysiology, Center for Integrative Physiology and Molecular Medicine (CIPMM), Saarland University, 66421 Homburg, Germany (2)
Centro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid. (2)
Charité – Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany; The Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London NW11AT, UK (2)
Children's Medical Research Institute (2)
Department of Biology, Institute of Microbiology, ETH Zürich, Switzerland (2)
Department of Biotechnology and Biomedicine, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark (2)
ETH Zürich Institute of Molecular Systems Biology Otto-Stern-Weg 3 8093 Zürich Switzerland (2)
Eppley Institute for Research in Cancer University of Nebraska Medical Center Omaha, NE 68198, USA (2)
Harvard medical school (2)

IsPrivate

False (4)

Classification

fungi (2)

Modification

4x(15)N labeled L-arginine (2)
57.021464 (2)
N6-dimethyl-L-lysine (2)
-17.026549 (1)
-18.010565 (1)
15.994915 (1)
28.0313 (1)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
4x(2)H labeled dimethylated L-lysine (1)
87.998286 (1)
N6 (1)
Not available (1)

Study type

Transcription profiling by array (143)
RNA-seq of coding RNA (35)
ChIP-seq (12)
Comparative genomic hybridization by array (7)
Other (5)
Transcription profiling by tiling array (4)
RNA-seq of non coding RNA (4)
Unknown experiment type (3)
Transcription profiling by RT-PCR (3)
Methylation profiling by array (3)
Proteomic profiling by array (2)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-chip by array (1)
CLIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (606)
2021 (579)
2023 (542)
2025 (506)
2020 (475)
2024 (438)
2019 (387)
2018 (358)
2017 (283)
2016 (267)
2015 (261)
2014 (221)
2013 (173)
2012 (144)
2010 (124)
2011 (112)
2026 (95)
2008 (72)
2009 (65)
2007 (36)
2006 (32)
2005 (29)
2004 (18)
2002 (18)
2003 (12)
2000 (12)
2001 (6)
1999 (6)
1998 (5)
1997 (1)

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Dysregulation of Streptococcus pneumoniae zinc homeostasis breaks ampicillin resistance in a pneumonia infection model

Streptococcus pneumoniae is the primary cause of community-acquired bacterial pneumonia with rates of penicillin and multi-drug resistance exceeding 80% and 40%, respectively. The innate immune response generates a variety of antimicrobial agents to control infection including zinc stres...

2022-02-23 | MTBLS318 | MetaboLights

In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids (Imaging MS assays)

Tapping into the metabolic cross-talk between a host and its virus can reveal unique strategies employed during infection. Viral infection is a dynamic process that generates an evolving metabolic landscape. Gaining a continuous view into the infection process is highly challenging and is limited...

2018-11-29 | MTBLS769 | MetaboLights

In plaque-mass spectrometry imaging of a bloom-forming alga during viral infection reveals a metabolic shift towards odd-chain fatty acid lipids (GC- and LC-MS assays)

2018-11-29 | MTBLS767 | MetaboLights

A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone

PRJNA674389 | ENA

A temporally resolved transcriptome for developing “Keller” explants of the Xenopus laevis dorsal marginal zone

Explanted tissues from vertebrate embryos reliably develop in culture and have provided essential paradigms for understanding embryogenesis, from early embryological investigations of induction, to the extensive study of Xenopus animal caps, to the current studies of mammalian gastruloids. Cultured ...

ORGANISM(S): Xenopus laevis

2020-11-04 | GSE160777 | GEO

Genome-wide profiling of miRNA expression dynamics in monocyte-derived dendritic cells following infection with a panel of intra-cellular bacteria

We report the application of RNA sequencing to assess the expression dynamics of miRNAs and their isoforms over time upon infection with a panel of six intracellular bacteria (Mycobacterium tuberculosis H37Rv, Mycobacterium tuberculosis Beijing strain GC1237, Mycobacterium bovis BCG, Salmonella typh...

ORGANISM(S): Homo sapiens

2015-02-18 | E-GEOD-64142 | biostudies-arrayexpress

Microsurgical Methods to Make the Keller Sandwich Explant and the Dorsal Isolate.

Not available

S-EPMC9989777 | biostudies-literature

The modified oblique keller capsular interpositional arthroplasty for hallux rigidus.

Not available

S-EPMC2918259 | biostudies-literature

Sorghum bicolor strain:Keller, E-Tian, Ji2731

Sorghum bicolor strain:Keller, E-Tian, Ji2731 Genome sequencing and assembly

PRJNA74553 | ENA

Process evaluation improves delivery of a nutrition-sensitive agriculture programme in Burkina Faso.