Kerr S S - OmicsDI

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Unknown (1574)
Transcriptomics (102)
Proteomics (34)
Genomics (16)
Multiomics (1)
Metabolomics (1)

Organisms

Homo sapiens (35)
Arabidopsis thaliana (26)
Mus musculus (23)
Saccharomyces cerevisiae (13)
Rattus norvegicus (5)
Bradyrhizobium diazoefficiens USDA 110 (3)
Salvelinus fontinalis (2)
Bradyrhizobium japonicum (2)
Coregonus clupeaformis (2)
Fundulus heteroclitus (2)
Bos taurus (2)
Perca flavescens (1)
Salmonella enterica subsp. enterica serovar Paratyphi A (1)
Picea sitchensis (1)
Gossypium barbadense (1)
Gossypium hirsutum (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)
Salmonella enterica subsp. enterica serovar Typhi (1)
Porphyromonas gingivalis (1)
Schizosaccharomyces pombe (1)
Escherichia coli (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Danio rerio (1)
Caenorhabditis elegans (1)
Drosophila melanogaster (1)
Hordeum vulgare (1)
Human herpesvirus 5 strain Merlin (1)

Organisms

Fundulus heteroclitus (2)
Saccharomyces cerevisiae (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (116)
pride (22)
MassIVE (9)
ENA (4)
MetaboLights (1)
PanoramaPublic (1)

Tissue

Colon (4)
Rectum (4)
Cell culture (3)
Brain (2)
Colonic cancer cell (2)
Colonic cancer cell line (2)
Heart (2)
Monocyte (2)
Neutrophil (2)
Prostate gland (2)
Rectal cancer cell line (2)
Skeletal muscle (2)
Adrenal gland (1)
B-lymphocyte (1)
Blood (1)
Blood cancer cell (1)
Blood cell (1)
Blood plasma (1)
Blood platelet (1)
Blood serum (1)
Bone cancer cell line (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cardiac muscle tissue (1)
Cecum cancer cell line (1)
Cervical cancer cell line (1)
Colorectal cancer cell line (1)
Cytotoxic T-lymphocyte (1)
T cell (1)

Disease

Colon cancer (4)
Rectum cancer (3)
Acute leukemia (2)
Gray platelet syndrome (2)
Breast cancer (1)
Disease free (1)
Malignant neoplasm of ovary (1)
Myocardial ischemia (1)
Prostate adenocarcinoma (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (22)
Shotgun proteomics (14)
SWATH MS (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Data-independent acquisition (2)
Mass spectrometry (1)

Instrument Platform

NextSeq 500 (6)
LTQ Orbitrap Velos (4)
Q Exactive (4)
Illumina HiSeq 2500 (2)
AB SOLiD 4 System (1)
Illumina Genome Analyzer IIx (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
Illumina NovaSeq 6000 (1)
LTQ (1)
LTQ Orbitrap Elite (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2011 (41)
2010 (19)
2015 (13)
2017 (10)
2018 (8)
2008 (8)
2014 (7)
2021 (6)
2012 (6)
2020 (5)
2016 (5)
2022 (4)
2013 (4)
2025 (2)
2009 (2)
2007 (2)
2026 (2)
2024 (2)
2004 (1)
2019 (1)

CHEBI ID

CHEBI:105799 (1)
CHEBI:116314 (1)
CHEBI:131438 (1)
CHEBI:131440 (1)
CHEBI:131443 (1)
CHEBI:131590|CHEBI:91296 (1)
CHEBI:132327 (1)
CHEBI:132328|CHEBI:16113 (1)
CHEBI:15354 (1)
CHEBI:15603|CHEBI:18347 (1)
CHEBI:15756 (1)
CHEBI:15843 (1)
CHEBI:16347 (1)
CHEBI:16411 (1)
CHEBI:16737 (1)
CHEBI:16755 (1)
CHEBI:16827 (1)
CHEBI:16828 (1)
CHEBI:16914|CHEBI:15365 (1)
CHEBI:16919 (1)
CHEBI:16990 (1)
CHEBI:17203 (1)
CHEBI:17295 (1)
CHEBI:17308 (1)
CHEBI:17351 (1)
CHEBI:17650 (1)
CHEBI:17687 (1)
CHEBI:17750 (1)
CHEBI:17775 (1)
CHEBI:17895|CHEBI:89461 (1)

Metabolite Name

1,2-dilinoleoyl-sn-glycero-3-phosphocholine (1)
1,2-dioleoyl-sn-glycero-3-phosphocholine|1,2-dipetroselenoyl-sn-glycero-3-phosphocholine (1)
1,2-dipalmitoleoyl-sn-glycero-3-phosphocholine (1)
1,2-dipalmitoyl-sn-glycero-3-phosphocholine (1)
1,3,7-Trimethyluric acid (1)
1-O-1'-(Z)-octadecenyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
1-Stearoyl-2-Hydroxy-sn-Glycero-3-Phosphoethanolamine (1)
1-arachidoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-linoleoyl-2-stearoyl-sn-glycerol (1)
1-oleoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-oleoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
1-oleoyl-2-palmitoyl-sn-glycero-3-phosphocholine (1)
1-palmitoyl-2-docosahexaenoyl-sn-glycero-3-phosphocholine (1)
1-palmitoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-palmitoyl-2-hydroxy-sn-glycero-3-phosphoethanolamine (1)
1-stearoyl-2-arachidonoyl-sn-glycero-3-phosphoethanolamine|C15-20:4 Phosphatidylcholine (1)
1-stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (1)
1-vaccenoyl-2-palmitoyl-sn-glycerol (1)
10-nitro-9E-octadecenoic acid|9-nitro-9E-octadecenoic acid (1)
17-phenyl trinor Prostaglandin E2|17-phenyl trinor Prostaglandin D2 (1)
2,6 dimethylheptanoyl carnitine (1)
2-(4-hydroxyphenyl)ethanol (1)
2-Ketohexanoic acid (1)
3-Indolepropionic acid (1)
3-Pyridylacetic acid|trigonelline (1)
3a,6b,7b-Trihydroxy-5b-cholanoic acid (1)
4-Androsten-11Beta-ol-3,17-dione|11β-Hydroxy-4-androstene-3,17-dione (1)
4-Hydroxy-3-methylbenzoic acid (1)
6-hydroxy-5-cholestanol|cholesterol (1)
7-Ketocholesterol (1)

First Public Date

2014 (3)
2016 (1)

Study type

Transcription profiling by array (57)
ChIP-chip by tiling array (19)
RNA-seq of coding RNA (11)
ChIP-seq (8)
Comparative genomic hybridization by array (7)
Methylation profiling by high throughput sequencing (4)
Unknown experiment type (3)
RNA-seq of non coding RNA (2)
Proteomic profiling by mass spectrometer (1)
Antigen profiling (1)
Other (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (176)
2022 (170)
2021 (161)
2023 (160)
2024 (146)
2020 (128)
2018 (108)
2019 (104)
2017 (82)
2015 (76)
2016 (74)
2011 (68)
2014 (44)
2012 (44)
2013 (42)
2010 (32)
2026 (22)
2008 (18)
2009 (17)
2007 (9)
2005 (3)
2004 (2)
2006 (2)
2003 (1)
1997 (1)

Lab affiliation

Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (3)
Debora Bonenfant, Novartis Institutes for Biomedical Research, Basel, Switzerland (1)
Department of Biosciences and Nutrition, Karolinska Institutet (1)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio (1)
Discovery Proteomics Facility University of Oxford (1)
European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) (1)
Institute for Diabetes and Obesity, Helmholtz Zentrum München, Neuherberg, Germany. and German Center for Diabetes Research (DZD), Neuherberg, Germany;d German Center for Diabetes Research, Neuherberg, Germany (1)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Otto-Hahn-Straße 6b 44227 Dortmund, Germany P: +49 (0)2 31.13 92-100 F: +49 (0)2 31.13 92-200 www.isas.de (1)
MRC-University of Glasgow Centre for Virus Research, Sir Michael Stoker Building, Garscube Campus, 464 Bearsden Road, Glasgow G61 1QH, Scotland (UK) (1)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (1)
Medical University of Vienna (1)
Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada (1)
Novartis Inst. for BioMedical Research (1)
Novo Nordisk Foundation Center for Protein Research, University of Copenhagen (Denmark) (1)
Queensland Alliance for Agriculture and Food Innovation, University of Queensland (1)
School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (1)
Stoller Biomarker Discovery Centre, University of Manchester, United kingdom (1)
Taussig Cancer Institute of Cleveland Clinic Foundation (1)
UW Medicine Diabetes Institute, University of Washington, Seattle, WA 98109 (1)
University of Oslo (1)

Tags

xref:PubMed:17363378 (1)
xref:PubMed:21356103 (1)
xref:PubMed:27179028 (1)

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localization of Scc2 between wild type and scc4-m35 cells in S-phase

Wild-type (AM15307) and scc4-m35 (AM15311) cells carrying SCC2-3FLAG were fixed for 2 hr, 15 min following an a-factor arrest. Samples were harvested, anti-HA ChIP was performed and both input and IP samples were sequenced for both strains. ChIP-seq for S. cerevisiae Scc2-3FLAG in S-phase cells in W...

ORGANISM(S): Saccharomyces cerevisiae

2016-07-21 | E-GEOD-70316 | biostudies-arrayexpress

Comparative Genomic Analysis of PhoP Regulon in S. Typhi and S. Typhimurium

Transcriptional profiling of three sequenced S. enterica strains: S. Typhimurium LT2, S. Typhi CT18, and S. Typhi Ty2 in PhoP-inducing and non-inducing conditions in vitro, and compared these results to profiles of phoP-/Q- mutants derived from S. Typhimurium LT2 and S. Typhi Ty2. Two-condition expe...

ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

2010-05-06 | E-GEOD-17670 | biostudies-arrayexpress

Coherent terabit communications with microresonator Kerr frequency combs.

Not available

S-EPMC4028627 | biostudies-literature

A Kerr polarization controller.

Not available

S-EPMC8770726 | biostudies-literature

Spo11-oligo mapping in S. cerevisiae Ctf19/CCAN kinetochore sub-complex mutant mcm21

During meiosis, crossover recombination is essential to link homologous chromosomes and drive faithful chromosome segregation. Crossover recombination is non-random across the genome, and centromere-proximal crossovers are associated with an increased risk of aneuploidy, including Trisomy 21 in huma...

ORGANISM(S): Saccharomyces cerevisiae

2015-12-15 | E-GEOD-72683 | biostudies-arrayexpress

Sulfate Radical Scavenging by Mineral Surfaces in Persulfate-Driven Oxidation Systems: Reaction Rate Constants and Implications.

Not available

S-EPMC7534697 | biostudies-literature

Observation of Kerr soliton microcomb locked with a phonon laser.

Not available

S-EPMC12758527 | biostudies-literature

Hydroxyl radical scavenging by solid mineral surfaces in oxidative treatment systems: Rate constants and implications.

Not available

S-EPMC7530771 | biostudies-literature

Using sulfur stable isotope ratios (δ³⁴ S) for animal geolocation: Estimating the delay mechanisms between diet ingestion and isotope incorporation in tail hair.