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TranscriptomicsTopoisomerase function in E. coli replication fork movement
Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays. We used DNA microarrays of the Escherichia coli genome to trace the progression of chromosomal replication forks in synchronized cells. We found that both DNA gyrase and topoisomerase IV (topo IV) prom...
ORGANISM(S): Escherichia coli 
2001-07-30 | E-GEOD-8 | biostudies-arrayexpress
TranscriptomicsThymine starvation and limitation in Escherichia coli thyA- cells
Transcriptional profiling of responses of E. coli thymine auxotrophs to i) growth under sub-optimal thymine concentration (TLM) and ii) lethal conditions under complete thymine starvation (TLD). Thymine limitation: Time series following shift to limiting thymine concentrations (15, 30, 45, 60 and 90...
ORGANISM(S): Escherichia coli 
2010-05-14 | E-GEOD-19879 | biostudies-arrayexpress
TranscriptomicsTemperature upshift in E coli gyrBT strain, time series
Responses of Escherichia coli W3110gyrb234 as they are upshifted to 42C Escherichia coli W3110gyrb234 cells sampled at several time points (2,5, 10, 40 min) as they are shifted to 42 C in LB, vs 0 min before upshift in LB
ORGANISM(S): Escherichia coli 
2010-07-01 | E-GEOD-4417 | biostudies-arrayexpress
UnknownOperon information improves gene expression estimation for cDNA microarrays.
Not available
S-EPMC1513396 | biostudies-literature
TranscriptomicsmRNA decay in E. coli
Half-lives of known and predicted E. coli mRNAs at single-gene resolution by using two-color fluorescent DNA microarrays. Groups of assays that are related as part of a time series. User Defined
ORGANISM(S): Escherichia coli 
2005-09-09 | E-GEOD-3267 | biostudies-arrayexpress
TranscriptomicsRNA Abundance in E. coli
Steady-state abundance of known and predicted E. coli mRNAs at single-gene resolution by using two-color fluorescent DNA microarrays. Set of arrays organized by shared biological context, such as organism, tumors types, processes, etc. Computed
ORGANISM(S): Escherichia coli 
2005-09-09 | E-GEOD-3265 | biostudies-arrayexpress
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