Kim D W DW - OmicsDI

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Unknown (473)
Genomics (26)
Transcriptomics (15)
Metabolomics (2)
Proteomics (2)

Organisms

Homo sapiens (33)
Mus musculus (6)
Oryza sativa (1)
Solanum lycopersicum (1)
Escherichia coli BL21(DE3) (1)
Saccharomyces cerevisiae (1)

Repository

EGA (26)
biostudies-arrayexpress (15)
MetaboLights (2)
pride (2)

Tissue

Breast cancer cell (1)
Epithelial cell (1)

Disease

Tumor (1)
Breast cancer (1)

Technology Type

Mass spectrometry (2)
Bottom-up proteomics (2)
Mass Spectrometry (2)
NMR spectroscopy (1)
Data-dependent acquisition (1)

Instrument Platform

Gas Chromatography MS - positive (2)
Illumina HiSeq 4000 (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2012 (3)
2010 (3)
2011 (2)
2025 (2)
2021 (1)
2016 (1)
2015 (1)
2014 (1)
2013 (1)
2009 (1)
2008 (1)
2023 (1)
2019 (1)

CHEBI ID

CHEBI:1148 (2)
CHEBI:116314 (2)
CHEBI:15354 (2)
CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15729 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:15824 (2)
CHEBI:15843 (2)
CHEBI:15887 (2)
CHEBI:15891 (2)
CHEBI:15940 (2)
CHEBI:16000 (2)
CHEBI:16015 (2)
CHEBI:16024 (2)
CHEBI:16027 (2)
CHEBI:16113 (2)
CHEBI:16119 (2)
CHEBI:16164 (2)
CHEBI:16196 (2)
CHEBI:16199 (2)
CHEBI:16235 (2)
CHEBI:16335 (2)
CHEBI:16359 (2)
CHEBI:16414 (2)
CHEBI:16610 (2)
CHEBI:16643 (2)
CHEBI:16695 (2)
CHEBI:16704 (2)

Metabolite Name

(-)-12-hydroxy-9,10-dihydrojasmonic acid (1)
(-)-2,7-Dolabelladiene-6beta,10alpha,18-triol (1)
(-)-8-hydroxy-11E,17-octadecadien-9-ynoic acid (1)
(-)-Cladielline (1)
(-)-Dilophol (1)
(-)-erythro-Anethole glycol 1-glucoside (1)
(-)-erythro-Anethole glycol 2-glucoside (1)
(1R,2R)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(1R,2R,4S)-p-Menthane-1,2,8-triol 8-glucoside (1)
(1S,2S)-3-oxo-2-pentyl-cyclopentanehexanoic acid (1)
(22E)-3beta-Hydroxy-5alpha-chola-7,22-dien-24-oic Acid (1)
(2E,4Z)-Decadienoylcarnitine (1)
(2R*,3R*)-1,2,3-Butanetriol (1)
(2R,3R,4R)-2-Amino-4-hydroxy-3-methylpentanoic acid (1)
(2S,4S)-Monatin (1)
(3S,5R,6R,7E)-3,5,6-Trihydroxy-7-megastigmen-9-one (1)
(3b,6b,8b,12a)-8,12-Epoxy-7(11)-eremophilene-6-angeloyloxy-8,12-dimethoxy-3-ol (1)
(4E,15E)-Bilirubin (1)
(4E,8E,10E-d18:3)sphingosine (1)
(5alpha,8beta,9beta)-5,9-Epoxy-3,6-megastigmadien-8-ol (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(6E,9E,12E,15E,18E,21E)-tetracosa-6,9,12,15,18,21-hexaenoic acid (1)
(6beta,8alpha)-6-Hydroxy-7(11)-eremophilen-12,8-olide (1)
(7Z)-14-hydroxy-10,13-dioxoheptadec-7-enoic acid (1)
(9R,10S,12Z)-9,10-Dihydroxy-8-oxo-12-octadecenoic acid (1)
(9R,13R)-1a,1b-dinor-10,11-dihydro-12-oxo-15-phytoenoic acid (1)
(9S,13S)-1a,1b-dihomo-jasmonic acid (1)
(9Z,11R,12S,13S,15Z)-12,13-Epoxy-11-hydroxy-9,15-octadecadienoic acid (1)
(E)-2-Methyl-2-buten-1-ol O-beta-D-Glucopyranoside (1)
(Z)-10-Hydroxy-8-decene-4,6-diynoic acid (1)

Study type

Transcription profiling by array (9)
RNA-seq of coding RNA (4)
Genotyping by array (1)
Comparative genomic hybridization by array (1)

Release Date

2020 (56)
2021 (55)
2022 (44)
2024 (40)
2023 (38)
2025 (33)
2016 (29)
2015 (28)
2019 (25)
2014 (24)
2013 (24)
2018 (20)
2017 (20)
2012 (17)
2011 (13)
2010 (7)
2008 (6)
2026 (5)
2009 (3)
2006 (1)

Lab affiliation

1Lester and Sue Smith Breast Center and Dan L. Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX 77030, USA (1)
Keck MS & Proteomics Resource Yale School of Medicine (1)

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Proteome data associated with the leaf senescence in Glycine max.

Not available

S-EPMC5013252 | biostudies-literature

Methanol is an endogenous elicitor molecule upon senescence of detached rice leaves

During senescence of detached rice leaves, tryptophan (Trp) and Trp-derived secondary metabolites such as serotonin and 4-coumaroylserotonin accumulated in concert with methanol (MeOH) production. This senescence-induced MeOH induction was closely associated with levels of pectin methylesterase (PME...

ORGANISM(S): Oryza sativa

2011-01-03 | E-GEOD-26387 | biostudies-arrayexpress

Effects of vitamin D supplements in patients with chronic hepatitis C: a randomized, multi-center, open label study.

Not available

S-EPMC7487303 | biostudies-literature

Changes of fat-mass and obesity-associated protein expression in the hippocampus in animal models of high-fat diet-induced obesity and D-galactose-induced aging.

Not available

S-EPMC7336480 | biostudies-literature

Comparative genomic hybridization of mouse liver and tumors from Acd mutant and wild type strains in p53 deficient background

DNA from tumors of 10 male mice were competitively hybridized with DNA from liver samples from the same mouse on NimbleGen CGH arrays to assess copy number changes in the tumors. Four of the mice were wildtype for Acd (ortholog of human TPP1), 2 of which were p53-/- and 2 of which were p53-/+. The...

ORGANISM(S): Mus musculus

2009-04-07 | E-TABM-680 | biostudies-arrayexpress

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice

Autism spectrum disorder (ASD) manifests as alterations in complex human behaviors including social communication and stereotypies. In addition to genetic risks, the gut microbiome differs between typically-developing (TD) and ASD individuals, though it remains unclear whether the microbiome contrib...

2019-07-04 | MTBLS726 | MetaboLights

Factors associated with D-dimer levels in HIV-infected individuals.

Not available

S-EPMC3953205 | biostudies-literature

Enterococcus diestrammenae sp. nov., isolated from the gut of Diestrammena coreana.

Not available

S-EPMC4080732 | biostudies-literature

Potent antiviral activity of Agrimonia pilosa, Galla rhois, and their components against SARS-CoV-2.

Not available

S-EPMC8299292 | biostudies-literature

Lactic acid inhibits the interaction between PD-L1 protein and PD-L1 antibody in the PD-1/PD-L1 blockade therapy-resistant tumor.

Not available