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TranscriptomicsTranscription profiling of dauer gene expression in Caenorhabditis elegans
These are the 94 microarray experiments that are published in the paper: John Wang and Stuart K. Kim. Global analysis of dauer gene expression in Caenorhabditis elegans, Development 2003 130: 1621-1634. There are 94 individual microarray experiments divided into 3 broad experiments. The first experi...
ORGANISM(S): Caenorhabditis elegans 
2005-07-13 | E-SMDB-1964 | biostudies-arrayexpress
TranscriptomicsGenome-wide analysis of developmental and sex-regulated gene expression profiles in C. elegans
We have constructed DNA microarrays containing 17,871 genes, representing about 94% of the 18,967 genes currently annotated in the Caenorhabditis elegans genome. These DNA microarrays can be used as a tool to define a nearly complete molecular profile of gene expression levels associated with differ...
ORGANISM(S): Caenorhabditis elegans 
2005-11-18 | E-GEOD-3633 | biostudies-arrayexpress
TranscriptomicsPHA-4 organogenesis
The pha-4 locus encodes a forkhead box A (FoxA/HNF3) transcription factor homolog that specifies organ identity for Caenorhabditis elegans pharyngeal cells. We used microarrays to identify pharyngeal genes and analyzed those genes to determine which were direct PHA-4 targets. Our data suggest that P...
ORGANISM(S): Caenorhabditis elegans 
2005-11-25 | E-GEOD-3681 | biostudies-arrayexpress
TranscriptomicsAging study
This SuperSeries is composed of the following subset Series: GSE12166: TJ411(fer-15(b26)II; age-1(hx542)II) vs. BA713(fer-15(b26)II) GSE12167: TJ1081)fer-15(b26)II; daf-16(m26)I) vs. BA713(fer-15(b26)II) GSE12168: Aging Time course Refer to individual Series
ORGANISM(S): Caenorhabditis elegans 
2008-07-29 | E-GEOD-12094 | biostudies-arrayexpress
TranscriptomicsAging Time course
RNA was isolated from age-synchronous cultures of hermaphrodite worms grown at 25?C at 2, 5, 8, or 11 days of adulthood. We observed no deaths in the worm population at days 2 and 5 of adulthood, 30% at day 8 and 93% death at day 11. The aging time course was repeated four times. Groups of assays t...
ORGANISM(S): Caenorhabditis elegans 
2008-07-29 | E-GEOD-12168 | biostudies-arrayexpress
TranscriptomicsTJ411(fer-15(b26)II; age-1(hx542)II) vs. BA713(fer-15(b26)II)
To identify changes in gene expression in age-1 mutants, we compared expression in fer-15(b26) animals to expression in fer-15(b26); age-1(hx542) mutants. We prepared RNA from young adult fer-15(b26) mutants grown at 25?C (five samples prepared at Stanford University and six samples prepared at the...
ORGANISM(S): Caenorhabditis elegans 
2008-07-29 | E-GEOD-12166 | biostudies-arrayexpress
TranscriptomicsTJ1081)fer-15(b26)II; daf-16(m26)I) vs. BA713(fer-15(b26)II)
To identify changes in gene expression in daf-16 mutants, we compared expression in fer-15 young adults to expression in fer-15(b26); daf-16(m26) young adults grown at 25?C. At Stanford University, four samples of fer-15 and five samples of fer-15; daf-16 animals were prepared. At the University o...
ORGANISM(S): Caenorhabditis elegans 
2008-07-29 | E-GEOD-12167 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor PHA-4::GFP Binding Regions in L2
modENCODE_submission_3158 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-03-31 | E-GEOD-26153 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor EGL-5::GFP Binding Regions in L3
modENCODE_submission_3159 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-03-31 | E-GEOD-25796 | biostudies-arrayexpress
GenomicsIdentification of Transcription Factor PHA-4::GFP Binding Regions in YA
modENCODE_submission_3161 This submission comes from a modENCODE project of Michael Snyder. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is ta...
ORGANISM(S): Caenorhabditis elegans 
2011-03-31 | E-GEOD-25799 | biostudies-arrayexpress
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