Kimura M M - OmicsDI

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Unknown (3603)
Transcriptomics (61)
Proteomics (52)
Genomics (10)
Metabolomics (3)
Models (1)

Organisms

Homo sapiens (41)
Mus musculus (34)
Chlamydomonas reinhardtii (18)
Enterococcus mundtii CRL35 (18)
Oncorhynchus tshawytscha (18)
Pseudomonas canadensis (18)
Human alphaherpesvirus 1 strain 17 (18)
Marchantia polymorpha subsp. ruderalis (18)
Methylocystis sp. (18)
Exiguobacterium sp. SH31 (18)
Amaranthus tricolor (18)
Porites pukoensis (18)
Porphyromonas gingivalis W83 (18)
Human betaherpesvirus 5 (18)
Bothrops insularis (18)
Arabidopsis thaliana (6)
Glycine max (4)
Oryza sativa Indica Group (2)
Schizosaccharomyces pombe (2)
Oryza sativa (2)
Oryza sativa Japonica Group (2)
Caenorhabditis elegans (2)
Human immunodeficiency virus 2 (2)
Drosophila melanogaster (2)
cellular organisms (2)
Cricetinae (1)
Ectocarpus siliculosus (1)
Gallus gallus (1)
Rattus norvegicus (1)
Norwalk virus (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (66)
jPOST (31)
pride (18)
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geo (1)
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Cell culture (3)
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WEHI-231 cell (1)
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Renal glomerulus (1)
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Disease

Osteosarcoma (1)
Lymphoma (1)
Restrictive cardiomyopathy (1)
Myofibrillar myopathy 6 (1)
Fungal infectious disease (1)
Malignant neoplasm of ovary (1)
Disease free (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (18)
Shotgun proteomics (12)
Bottom-up proteomics (4)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Affymetrix/Illumina (1)
Data-independent acquisition (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Illumina Genome Analyzer II (1)
HiSeq X Ten (1)
Illumina HiSeq 2500 (1)
Q Exactive (1)
Exactive Plus (Thermo Scientific) (1)
Q Exactive (Thermo Scientific) (1)
Agilent 1100 Series LC/MSD Trap (1)
Esquire 3000+ (1)
AXIMA CFR (1)

Publication Date

2023 (12)
2021 (11)
2013 (10)
2014 (9)
2010 (9)
2012 (8)
2017 (7)
2016 (7)
2015 (7)
2011 (7)
2008 (6)
2025 (6)
2020 (5)
2026 (4)
2019 (4)
2024 (3)
2022 (3)
2007 (2)
2009 (1)
2006 (1)
2018 (1)

UNIPROT ID/AC

Q9DBB1 (1)
Q15303 (1)
P15056 (1)

CHEBI ID

CHEBI:35782 (1)
CHEBI:26034 (1)
CHEBI:18361 (1)
CHEBI:16618 (1)
CHEBI:16152 (1)
CHEBI:15996 (1)
CHEBI:17552 (1)
CHEBI:18367 (1)
CHEBI:189450 (1)
CHEBI:142905 (1)
CHEBI:177072 (1)
CHEBI:75750 (1)
CHEBI:145663 (1)
CHEBI:136621 (1)
CHEBI:69657 (1)
CHEBI:71498 (1)
CHEBI:69814 (1)
CHEBI:9047 (1)
CHEBI:7513 (1)
CHEBI:28299 (1)
CHEBI:32080 (1)
CHEBI:27994 (1)
CHEBI:131581 (1)
CHEBI:131583 (1)
CHEBI:71730 (1)
CHEBI:141598 (1)
CHEBI:141597 (1)
CHEBI:141596 (1)
CHEBI:141595 (1)
CHEBI:141594 (1)

Metabolite Name

Isorhamnetin-3-O-glucoside (1)
Nicotiflorin (1)
4-O-Glucosylvitexin (1)
Quercetin 3-O-glucosyl-rutinoside (1)
1-O-(4-Coumaroyl)-beta-D-Glucose (1)
Salicylic Acid 2-O-beta-D-Glucoside (1)
Fructoseleucine (1)
Cynaroside (1)
Quercetin 3-(6''-malonyl-glucoside) (1)
Quercetin 3-O-(6''-acetyl-glucoside) (1)
Vicenin-3 (1)
Baimaside (1)
Isoquercitrin (1)
Vicenin-2 (1)
Schaftoside (1)
Neoschaftoside (1)
Astragalin (1)
PE(37:3) (1)
PE(37:2) (1)
PE(36:4) (1)
PE(18:1_20:3) (1)
PE(18:0_20:4) (1)
PE(18:0_20:3) (1)
PE(18:2_20:1) (1)
PE(18:1_20:1) (1)
PE(18:1_18:2) (1)
PE(18:1_18:1) (1)
PE(18:1_18:0) (1)
Rutin (1)
Adenosine (1)

IsPrivate

False (1)

First Public Date

2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

Not available (2)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (10)
ChIP-seq (6)
Transcription profiling by tiling array (4)
ChIP-chip by tiling array (3)
Transcription profiling by SAGE (2)
Unknown experiment type (2)
One-color microarray (1)
Animal - Single-cell sequencing (1)
RNAi profiling by array (1)
Other (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)

Release Date

2022 (439)
2025 (394)
2021 (351)
2023 (348)
2024 (317)
2020 (269)
2019 (238)
2018 (206)
2017 (180)
2016 (142)
2015 (138)
2014 (130)
2013 (100)
2012 (76)
2010 (57)
2026 (57)
2011 (56)
2009 (31)
2008 (26)
2007 (22)
2006 (16)
2005 (16)
2004 (14)
2003 (12)
2002 (10)
1999 (9)
2001 (5)
2000 (5)
1998 (4)
1997 (1)

Lab affiliation

Institute of Health and Sport Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8574, Ibaraki, Japan (2)
Institute of Advanced Technology, Kindai University (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
Professor, Niigata U. Faculty of Agriculture, Lab. of Plant Breeding 2-8050 Ikarashi, Nishi-ku, Niigata 950-2181, Japan Tel +81-25-262-6615 Fax +81-25-262-6854 E-mail :okazaki@agr.niigata-u.ac.jp　 (1)
VIB-UGent Center for Medical Biotechnology (1)
Graduate School of Medical and Dental Sciences (1)
RIKEN RCAI (1)
Research Institute for Microbial Diseases, Osaka University (1)
Laboratory of Immune Signal, National Institute of Biomedical Innovation ( lab head ) (1)
Eisai Co., Ltd. (1)
medical school, Kochi university (1)
ZEA-3 Analytics Forschungszentrum Jülich (1)
Faculty of Biology University of Freiburg (1)
Max Planck Institute of Immunobiology and Epigenetics, Stübeweg 51, 79108 Freiburg im Breisgau (1)
Proteomics Unit Max Planck Institute of Immunobiology and Epigenetics (1)
Cellular Dynamics Laboratory, RIKEN, Japan (1)
Professor Cellular and Molecular Medicine Department University of Arizona College of Medicine - Tucson (1)

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Osteoprotegerin-dependent M cell self-regulation balances gut infection and immunity.

Not available

S-EPMC6957684 | biostudies-literature

An adenylyl cyclase, CyaB, acts as an osmosensor in Myxococcus xanthus.

Not available

S-EPMC1112002 | biostudies-literature

Epithelium-Intrinsic MicroRNAs Contribute to Mucosal Immune Homeostasis by Promoting M-Cell Maturation.

Not available

S-EPMC4773159 | biostudies-literature

Protective Role of the M-Sec-Tunneling Nanotube System in Podocytes.

Not available

S-EPMC8259684 | biostudies-literature

Specific blaCTX-M-8/IncI1 Plasmid Transfer among Genetically Diverse Escherichia coli Isolates between Humans and Chickens.

Not available

S-EPMC5444161 | biostudies-literature

Genome-wide analysis of H3K9me2 in ibm1, kyp, and cmt3 mutants of Arabidopsis thaliana

In diverse eukaryotes, constitutively silent sequences, such as transposons and repeats, are marked by methylation at histone H3 lysine 9 (H3K9me). Despites the conservation and importance in the genome integrity, mechanisms to exclude H3K9m from active genes remained largely unexplored. Here we sho...

ORGANISM(S): Arabidopsis thaliana

2010-09-21 | E-GEOD-22953 | biostudies-arrayexpress

Distinct Roles for the N- and C-terminal Regions of M-Sec in Plasma Membrane Deformation during Tunneling Nanotube Formation.

Not available

S-EPMC5024327 | biostudies-literature

Eosinophil ETosis and Charcot-Leyden crystals in Kimura disease.

Not available

S-EPMC11783097 | biostudies-literature

Characterization of M Cells in Tear Duct-Associated Lymphoid Tissue of Mice: A Potential Role in Immunosurveillance on the Ocular Surface.

Not available

S-EPMC8645900 | biostudies-literature

Development of intestinal M cells and follicle-associated epithelium is regulated by TRAF6-mediated NF-κB signaling.