King Emily E - OmicsDI

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Genomics (13)
Transcriptomics (3)
Proteomics (1)
Metabolomics (1)

Organisms

Homo sapiens (14)
Fundulus heteroclitus (1)
Mus musculus (1)

Repository

EGA (13)
biostudies-arrayexpress (3)
MassIVE (1)
MetaboLights (1)

Technology Type

Illumina 15K (8)
Mass spectrometry (1)

Instrument Platform

10X Genomics Chromium (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Q Exactive Plus (1)
Liquid Chromatography MS - negative - reverse phase (1)

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2023 (1)

CHEBI ID

CHEBI:10017 (1)
CHEBI:10032 (1)
CHEBI:10073 (1)
CHEBI:10075 (1)
CHEBI:10082 (1)
CHEBI:10086 (1)
CHEBI:101096 (1)
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CHEBI:10363 (1)
CHEBI:10364 (1)
CHEBI:10366 (1)
CHEBI:104011 (1)
CHEBI:104120 (1)

Metabolite Name

()-(alpha)-Kainic Acid (1)
()-1-Octen-3-ol (1)
()-Dolichodial (1)
(+)-(S)-6-[4-Chloro-a-(1H-1,2,4-triazol-1-yl)benzyl]-1-methyl-1H-benzotriazole (1)
(+)-(S)-Citalopram oxalate (1)
(+)-10-Deoxymethynolide (1)
(+)-Alantolactone (1)
(+)-Costunolide (1)
(+)-D-Isosorbide (1)
(+)-Etomidate (1)
(+)-Flabellidine (1)
(+)-Fustin (1)
(+)-Gallocatechin (1)
(+)-Lacosamide (1)
(+)-Valencene (1)
(+)-[6]-Gingerol (1)
(+)-aristolochene (1)
(+)-aromadendrin (1)
(+)-beta-selinene (1)
(+)-delta-selinene (1)
(+)-endo-beta-bergamotene (1)
(+)-lariciresinol (1)
(+)-medicarpin (1)
(+)-podocarpic acid (1)
(-)-(S)-Equol (1)
(-)-12(R),13(S)-vernolic acid (1)
(-)-8-Prenylnaringenin (1)
(-)-Abietic acid (1)
(-)-Alkannin (1)
(-)-Andrographolide (1)

Study type

Transcription profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of coding RNA (1)

Release Date

2021 (1)
2020 (1)
2014 (1)

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A shotgun metabolomics approach to characterize the dissolved organic matter pool in the Samail Ophiolite aquifer

The process of serpentinization has been implicated in supporting life on both early Earth and other worlds in our Solar System. While numerous studies have provided clues to the survival strategies of microbial communities in serpentinizing environments on modern Earth, characterizing microbial act...

2023-03-02 | MTBLS6081 | MetaboLights

Oncogenic pathways in uveal melanoma identified by phosphoproteomic analysis

The uveal melanoma cell lines MP41 and MP46 driven by oncogenic G11 (Q209L) and Gq (Q209L), respectively, and a control cell line OCM-1A driven by oncogenic BRAF (V600E) were treated for 24 hours with FR900359, a highly specific inhibitor of Gq/11. Protein extracts were collected and TMT labeled pri...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-11-11 | MSV000090700 | MassIVE

Genes enabling phenotypic plasticity evolve canalized gene expression by their limited associations with transcriptional regulators

Global climate change increasingly polarizes environments, presenting unprecedented challenges to many organisms (Smol, 2012). Polarization occurs not only in the spatial dimension, producing greater desert drought and tropical rainfall, for example, but also in the temporal dimension by making a lo...

ORGANISM(S): Fundulus heteroclitus

2014-10-02 | E-GEOD-47035 | biostudies-arrayexpress

RNA-seq of gonadal adipose tissue from male and female Trim28-WT and Trim28 adipose specific KO mice

Many genes have been implicated in WAT lipid metabolism, including tripartite motif containing 28 (Trim28), a gene proposed to primarily influence adiposity via epigenetic mechanisms in embryonic development. We set out to determine if adipose specific deletion of Trim28 led to changes in adipose ti...

ORGANISM(S): Mus musculus

2020-11-25 | E-MTAB-9809 | biostudies-arrayexpress

Deciphering the molecular immune response to COVID-19 using single cell multi-omics

Multi-omics single-cell profiling of surface proteins, gene expression and lymphocyte immune receptors from hospitalised COVID-19 patient peripheral blood immune cells and healthy controls donors. Identification of the coordinated immune cell compositional and state changes in response to SARS-CoV-2...

ORGANISM(S): Homo sapiens

2021-03-17 | E-MTAB-10026 | biostudies-arrayexpress

ATD

WTCCC1 project Autoimmune Thyroid Disease (ATD) samples

EGAD00000000011 | EGA

WTCCC1 project Breast cancer (BC) samples

EGAD00000000013 | EGA

WTCCC1 project Multiple Sclerosis (MS) samples

EGAD00000000012 | EGA

WTCCC2 Ankylosing spondylitis cases - individual

WTCCC1 project Ankylosing Spondylitis (AS) samples

EGAD00000000010 | EGA