King J R JR - OmicsDI

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Unknown (700)
Genomics (17)
Models (9)
Proteomics (7)
Metabolomics (3)

Organisms

Homo sapiens (18)
Schizophyllum commune H4-8 (5)
Mycobacterium tuberculosis SP7 (5)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (5)
Oryza sativa Japonica Group (5)
Rabbit calicivirus (5)
Crotalus durissus terrificus (5)
Eriocheir sinensis (5)
Candidatus Endoriftia persephonae (5)
Mycobacterium tuberculosis SP10 (5)
Mycobacterium tuberculosis SP13 (5)
Cotesia typhae (5)
Mycobacterium tuberculosis SP22 (5)
Cepaea nemoralis (5)
Enterobacter ludwigii (5)
Trichoderma asperellum CBS 433.97 (5)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (5)
Nakaseomyces glabratus (5)
Olea europaea (5)
Chlamydomonas reinhardtii (5)
Lama (5)
Planorbella pilsbryi (5)
Wolbachia sp. wMelPop (5)
Pyricularia oryzae P131 (5)
Enterococcus mundtii CRL35 (5)
Pongo pygmaeus (5)
Gryllodes sigillatus (5)
Oncorhynchus tshawytscha (5)
Arabidopsis (4)
Embryophyta (1)

Repository

EGA (17)
BioModels (6)
pride (5)
FAIRDOMHub (3)
MetaboLights (3)
MassIVE (2)

Tissue

Cell culture (2)
Lung (1)
Embryonic stem cell (1)
Macrophage (1)

Disease

Wiskott-Aldrich syndrome (1)
Breast cancer (1)

Technology Type

Illumina 15K (8)
Mass Spectrometry (5)
Mass spectrometry (3)
Shotgun proteomics (3)
Illumina HiSeq 2500 (ILLUMINA), AB SOLiD System (ABI_SOLID) (1)
SRM/MRM (1)
Bottom-up proteomics (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
LTQ FT (1)
LTQ Orbitrap Velos (1)
Orbitrap Fusion (1)

Publication Date

2024 (5)
2023 (3)
2022 (3)
2005 (1)
2014 (1)
2013 (1)
2012 (1)
2015 (1)
2025 (1)
2020 (1)

UNIPROT ID/AC

Q9XFM0 (2)
Q940U6 (2)
Q940Y5 (1)
Q9S7Z8 (1)
Q9LTS3 (1)
O04291 (1)
Q9SB04 (1)
P49678 (1)
Q9SSC9 (1)
P10145 (1)
Q9LPW7 (1)
Q9LW29 (1)
Q9ZR12 (1)
Q9SL42 (1)
Q570C0 (1)
Q9LQT8 (1)
Q9MAA7 (1)
Q96247 (1)
P49677 (1)

CHEBI ID

CHEBI:32906 (1)
CHEBI:29590 (1)
CHEBI:29605 (1)
CHEBI:32902 (1)
CHEBI:30088 (1)
CHEBI:23530 (1)
CHEBI:31297 (1)
CHEBI:31826 (1)
CHEBI:31825 (1)
CHEBI:63742 (1)
CHEBI:135282 (1)
CHEBI:31946 (1)
CHEBI:6149 (1)
CHEBI:31322 (1)
CHEBI:5068 (1)
CHEBI:3215 (1)
CHEBI:79868 (1)
CHEBI:5685 (1)
CHEBI:7509 (1)
CHEBI:16387 (1)
CHEBI:90237 (1)
CHEBI:90865 (1)
CHEBI:83766 (1)
CHEBI:135534 (1)
CHEBI:31937 (1)
CHEBI:134996 (1)
CHEBI:167208 (1)
CHEBI:135177 (1)
CHEBI:188559 (1)
CHEBI:7612 (1)

Metabolite Name

(3beta,4alpha,5alpha)-3-Hydroxy-4-methylcholest-7-ene-4-carboxylic acid (1)
(1S)-1-{(2R,3R,5R)-5-Hydroxy-3-[(3beta,5alpha,13alpha,14beta,17alpha)-3-hydroxy-4,4,14-trimethylandrost-7-en-17-yl]tetrahydro-2-furanyl}-2-methyl-1,2-propanediol (1)
(8alpha,9beta,11beta,14beta,20S,23S,24R)-11,23,24,25-Tetrahydroxydammar-13(17)-en-3-one (1)
1-[(1R,3aS,5aR,5bR,7aR,9S,11aR,11bR,13aR,13bS)-9-Hydroxy-3a-(hydroxymethyl)-5a,5b,8,8,11a-pentamethylicosahydro-1H-cyclopenta[a]chrysen-1-yl]ethanone (1)
Theasapogenol b (1)
(6R)-6-[(1E,3Z,5R,7E,9E,11R,13S,14R,15S)-3-Ethyl-14-hydroxy-5,9,11,13,15-pentamethyl-12-oxo-1,3,7,9-heptadecatetraen-1-yl]-5,6-dihydro-2H-pyran-2-one (1)
E-Tokoferol (1)
Bolandiol dipropionate (1)
(2S)-2-(4-Isobutylphenyl)propanoic acid - L-lysine hydrate (1:1:1) (1)
Yamogenin (1)
(5beta)-14-Hydroxycholest-7-ene-3,6-dione (1)
Metenolone enanthate (1)
10-[(1R,2S)-2-Hexylcyclopropyl]decanoic acid (1)
METHYL OLEATE (1)
(6Z)-17-Methyl-6-octadecenoic acid (1)
Nisobamate (1)
(3beta,5beta,6beta,7alpha,22E,24xi)-5,19-Cycloergost-22-ene-3,6,7-triol (1)
(3beta,6beta,7alpha,22E,24xi)-Ergosta-4,22-diene-3,6,7-triol (1)
(3beta,7beta,22E,24xi)-Ergosta-5,22-diene-3,7,8-triol (1)
(3beta,4alpha,5alpha)-3-Hydroxycholest-7-ene-4-carboxylic acid (1)
(14xi,22R,23R,24S)-22,23-Dihydroxyergost-4-en-3-one (1)
(2S)-2-Aminotridecanoic acid (1)
(3alpha,5beta)-3,17,21-Trihydroxypregnan-20-one (1)
3a,11b,21-Trihydroxy-5b-pregnan-20-one (1)
Drostanolone (1)
(5Z,9alpha,11alpha,13E,15S)-9,11,15-Trihydroxy-15-methylprosta-5,13-dien-1-oic acid (1)
(4aS,8S,8aS)-8-[(3S)-3-Hydroxy-3-methyl-4-penten-1-yl]-4,4,8a-trimethyl-7-methyleneoctahydro-2(1H)-naphthalenone (1)
Acutilol A (1)
(3alpha)-3,20,21-Trihydroxypregnan-11-one (1)
(3alpha,8xi,9xi,10xi,13xi,14xi)-Pregnane-3,11,17,20,21-pentol (1)

IsPrivate

False (6)

Modelling Approach

Ordinary differential equation model (6)

Release Date

2021 (74)
2022 (69)
2025 (67)
2023 (63)
2024 (62)
2020 (62)
2019 (36)
2015 (35)
2014 (32)
2012 (30)
2011 (29)
2013 (27)
2016 (25)
2018 (24)
2017 (23)
2009 (10)
2008 (10)
2026 (9)
2010 (7)
2007 (5)
2006 (1)

Lab affiliation

Lydia Becker Institute of Immunology and Inflammation, University of Manchester, M13 9PL, United Kingdom (1)
Cellular and Molecular Pathology, UCSF (1)
King Abdullah international medical research center (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Bioscience Program, Biological and Environmental Science and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal 23955-6900, Kingdom of Saudi Arabia (1)

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Epidemiology of Covid-19 in a Long-Term Care Facility in King County, Washington.

Not available

S-EPMC7121761 | biostudies-literature

Middleton2012_GibberellinSignalling

This model is from the article: Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling. Middleton AM , Úbeda-Tomás S , Griffiths J , Holman T , Hedden P , Thomas SG , Phillips AL , Holdsworth MJ , Bennett MJ , K...

2024-09-02 | BIOMD0000000422 | BioModels

Band2012_DII-Venus_FullModel

This model is from the article: Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band LR, Wells DM, Larrieu A, Sun J, Middleton AM, French AP, Brunoud G, Sato EM, Wilson MH, Péret B, Oliva M, Swarup R, Sairanen I,...

2024-09-02 | BIOMD0000000413 | BioModels

Evidence of altered fatty acid metabolism in dogs with naturally occurring valvular heart disease and congestive heart failure

INTRODUCTION: Myxomatous mitral valve disease (MMVD) is the most common cardiac condition in adult dogs. The disease progresses over several years and affected dogs may develop congestive heart failure (HF). Research has shown that myocardial metabolism is altered in cardiac dise...

2022-03-31 | MTBLS716 | MetaboLights

Band2012_DII-Venus_ReducedModel

This model is from the article: Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band LR, Wells DM, Larrieu A, Sun J, Middleton A...

2024-09-02 | BIOMD0000000414 | BioModels

Absolute protein quantification of Mycoplasma pneumoniae proteome by combining selected reaction monitoring of a reduced set of labeled peptides and label-free shotgun mass spectrometry.

We quantified the protein abundances of Mycoplasma pneumoniae (Mpn), a genome-reduced organism, by combining selected reaction monitoring of a reduced set of labeled peptides and label-free shotgun mass spectrometry. A set of 77 labeled peptides were synthesized and used as internal standard peptide...

ORGANISM(S): Mycoplasma pneumoniae (strain ATCC 29342 / M129)

2023-08-31 | PXD035159 | Pride

Dunster2014 - WBC Interactions (Model1)

Dunster2014 - WBC Interactions (Model1) This is a sub-model of a three-step inflammatory response modelling study. The model includes distinct populations of white blood cells namely, macrophages and active and apoptotic neutrophil populations. Neutrophil apoptosis rate is predicted to be crucial fo...

2024-09-02 | BIOMD0000000616 | BioModels

High diversity of fungal ecological groups from ice-free pristine and disturbed areas in the Fildes Peninsula, King George Island, Antarctica.

Not available

S-EPMC11753637 | biostudies-literature

Twycross2010_Auxin_Transport

This is a model with 20 cells - 20 cytplasms and 21 apoplasts - as described in the article: Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study. by Twycross J, Band LR, Bennett MJ, King JR, Krasnogor N. BMC Syst Bio...

2005-01-01 | MODEL1005200000 | BioModels

Development and Optimization of an Unbiased, Metagenomics-Based Pathogen Detection Workflow for Infectious Disease and Biosurveillance Applications.

Not available

S-EPMC9966482 | biostudies-literature

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