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TranscriptomicsEucalyptus grandis BC progeny
The gene expression profiles of the differentiating xylem of 91 Eucalyptus grandis backcross individuals were characterized following a loop design (Churchill, G.A. Nat Genet. 2002 Dec;32 Suppl:490-5). In this design, RNA from genotype 1666 (labeled with Cy5) was hybridized with RNA from genotype 16...
ORGANISM(S): Eucalyptus grandis 
2010-06-05 | E-GEOD-502 | biostudies-arrayexpress
TranscriptomicsGene expression in whole-roots of a Populus trichocarpa and Populus deltoides pseudo-backcross population
A microarray analysis of whole-genome gene expression in roots was carried out in a (Populus trichocarpa X Populus deltoides) X Populus deltoides pseudo-backcross pedigree. Genetic variation in gene expression was quantified for 55,793 predicted gene models based on a single probe per gene. Resulta...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2010-06-24 | E-GEOD-20118 | biostudies-arrayexpress
TranscriptomicsGene expression in leaves of a Populus trichocarpa and Populus deltoides pseudo-backcross population
A microarray analysis of whole-genome gene expression in leaves was carried out in a (Populus trichocarpa X Populus deltoides) X Populus deltoides pseudo-backcross pedigree. Genetic variation in gene expression was quantified for 55,793 predicted gene models based on a single probe per gene. Result...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2010-06-24 | E-GEOD-20117 | biostudies-arrayexpress
TranscriptomicsExpression profile of contrasting maize genotypes grown on acid and control soil (root tips)
Aluminum toxicity is one of the major limiting factors for many crops worldwide. The primary symptom of Al toxicity syndrome is the inhibition of root growth, leading to poor water and nutrient absorption. The causes of this inhibition are still elusive, with several biochemical pathways being affec...
ORGANISM(S): Zea mays 
2010-09-20 | E-GEOD-21070 | biostudies-arrayexpress
TranscriptomicsRoot transcriptome remodeling of Arabidopsis in response to high levels of magnesium sulfate
Martian regolith (unconsolidated surface material) is a potential medium for plant growth in bioregenerative life support systems during manned missions on Mars. However, hydrated magnesium sulfate mineral levels in the regolith of Mars can reach as high as 10 wt%, and would be expected to be highly...
ORGANISM(S): Arabidopsis thaliana 
2010-09-17 | E-GEOD-20109 | biostudies-arrayexpress
TranscriptomicsGene expression and intragenic polymorphism in a Populus trichocarpa and Populus deltoides pseudo-backcross pedigree
A microarray analysis of whole-genome gene expression and single feature polymorphism in a (Populus trichocarpa X Populus deltoides) X Populus deltoides pseudo-backcross pedigree. Genetic variation in gene expression was quantified for 55,793 predicted gene models based on a single probe per gene. ...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-09-06 | E-GEOD-12623 | biostudies-arrayexpress
TranscriptomicsCornChip0-Maize Pilot GeneChip Array
To define the parameters necessary to design short oligo arrays for maize (Zea mays L.), a species with particularly high nucleotide (SNP) and insertion-deletion (indel) polymorphism frequencies, gene expression was analyzed in for four maize inbred lines using a custom Affymetrix DNA array. Statist...
ORGANISM(S): Zea mays 
2010-06-11 | E-GEOD-4663 | biostudies-arrayexpress
TranscriptomicsExpression profile of contrasting maize genotypes grown in acid and control soil (leaves)
Aluminum toxicity is one of the major limiting factors for many crops worldwide. The primary symptom of Al toxicity syndrome is the inhibition of root growth, leading to poor water and nutrient absorption. The causes of this inhibition are still elusive, with several biochemical pathways being affec...
ORGANISM(S): Zea mays 
2010-12-01 | E-GEOD-22479 | biostudies-arrayexpress
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