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ModelsKlipp2002_MetabolicOptimization_linearPathway(n=2)
Klipp2002_MetabolicOptimization_linearPathway(n=2) The model describes time dependent gene expression as a means to enable cells to adapt metabolic activity optimally based on environmental conditions. It uses a simple unbranched pathway and a constraint of fixed total enzyme. It c...
2024-09-02 | BIOMD0000000104 | BioModels
ModelsBruck2008_Glycolysis
Exploring the effect of variable enzyme concentrations in a kinetic model of yeast glycolysis Jozsef Bruck, Wolfram Liebermeister, Edda Klipp, Genome Inform 2008 20:1-14 Abstract: Metabolism is one of the best studied fields of bioch...
2005-01-01 | MODEL1011010000 | BioModels
ModelsKofahl2004_PheromonePathway
This a model from the article: Modelling the dynamics of the yeast pheromone pathway. Kofahl B, Klipp E Yeast[2004 Jul; Volume: 21 (Issue: 10 )] Page info: 831-50 15300679, Abstract: We present a mathematical model of the dynamics of th...
2024-09-02 | BIOMD0000000032 | BioModels
ModelsSchaber2006_Pheromone_Starvation_Crosstalk
This a model from the article: A modelling approach to quantify dynamic crosstalk between the pheromone and the starvation pathway in baker's yeast. Schaber J, Kofahl B, Kowald A, Klipp E FEBS J.2006 Aug; 273(15):3520-33 16884493, Abstract: ...
2024-09-02 | BIOMD0000000237 | BioModels
ModelsStanford2013 - Kinetic model of yeast metabolic network (regulation)
Stanford2013 - Kinetic model of yeast metabolic network (standard) Large-scale model construction based on a logical layering of data such as reaction fluxes, metabolite concentrations, and kinetic constants. This model is built with regulatory information. ...
2024-09-02 | BIOMD0000000497 | BioModels
ModelsStanford2013 - Kinetic model of yeast metabolic network (standard)
Stanford2013 - Kinetic model of yeast metabolic network (standard) Large-scale model construction based on a logical layering of data such as reaction fluxes, metabolite concentrations, and kinetic constants. This model is described in the article...
2024-09-02 | BIOMD0000000496 | BioModels
ModelsSchaber2012 - Hog pathway in yeast
Schaber2012 - Hog pathway in yeast The high osmolarity glycerol (HOG) pathway in the yeast Saccharomyces cerevisiae is one of the best-studied mitogen-activated protein kinase (MAPK) pathways and serves as a prototype signalling system for eukaryotes. This pathway is necessary and ...
2024-09-02 | BIOMD0000000429 | BioModels
ModelsTalemi2016 - Yeast osmo-homoestasis
Talemi2016 - Yeast osmo-homoestasis This model is described in the article: Systems Level Analysis of the Yeast Osmo-Stat. Talemi SR, Tiger CF, Andersson M, Babazadeh R, Welkenhuysen N, Klipp E, Hohmann S, Schaber J. Sci Rep 2016; 6: 30950 Abstract: Adaptation is an i...
2017-05-18 | MODEL1606100000 | BioModels
ModelsWodke2013 - Genome-scale constraint-based model of M.pneumoniae energy metabolism (iJW145)
Wodke2013 - Genome-scale constraint-based model of M.pneumoniae energy metabolism (iJW145) A new genome-scale metabolic reconstruction of M.pneumoniae is used in combination with external metabolite measurement and protein abundance measurements to quantitatively explore the energ...
2005-01-01 | MODEL1301290000 | BioModels
ModelsKuhn2009_EndoMesodermNetwork
This a model from the article: Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. Kühn C, Wierling C, Kühn A, Klipp E, Panopoulou G, Lehrach H, Poustka AJ. BMC Syst Biol.2009 Aug 23;3:83. 19698179, Abstract: BACK...
2024-09-02 | BIOMD0000000235 | BioModels
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