Knime - OmicsDI

Show results for

Unknown (81)
Proteomics (57)
Metabolomics (13)
Transcriptomics (2)

Organisms

Streptomyces coelicolor (55)
Pseudomonas aeruginosa PA103 (55)
Bartonella quintana JK 31 (55)
Bombyx mori (55)
Onchocerca volvulus (55)
Klebsiella pneumoniae (55)
Musca domestica (55)
Brugia malayi (55)
Schizosaccharomyces pombe (55)
Oryza sativa (55)
Cnidaria (55)
Streptomyces coelicolor A3(2) (55)
Sus scrofa (55)
Human immunodeficiency virus 1 (55)
Oryza sativa Indica Group (55)
Eukaryota (55)
Sinorhizobium meliloti BL225C (55)
Vitis (55)
Sus scrofa domesticus (55)
Ostreococcus tauri (55)
Saccharomyces cerevisiae (55)
Synechocystis sp. PCC 6803 (55)
Populus tremula x Populus alba (55)
Olavius algarvensis Gamma 1 endosymbiont (55)
Vitis vinifera (55)
Gigantopelta aegis (55)
Saccharopolyspora erythraea (55)
Staphylococcus aureus (55)
Homo sapiens (2)
Scenedesmus vacuolatus (1)

Repository

pride (55)
MetaboLights (12)
MassIVE (2)
biostudies-arrayexpress (1)
geo (1)
GNPS (1)

Tissue

Cell culture (11)
Whole body (4)
Liver (4)
Myoblast (3)
Brain (3)
Cell suspension culture (3)
Blood plasma (3)
Permanent cell line cell (3)
Epithelial cell (3)
Whole membrane (2)
White adipose tissue (2)
Early embryonic cell (2)
Blood serum (2)
Photosynthetic cell (2)
Rosette (2)
Hepatocyte (2)
B cell (2)
Floret (1)
Fat cell (1)
Jejunum (1)
Duodenum (1)
Skeletal muscle fiber (1)
Ileum (1)
Aorta (1)
Breast cancer cell (1)
Pancreatic islet (1)
Stem (1)
Embryonic stem cell (1)
Urine (1)
Brown adipose tissue (1)

Disease

Obesity (3)
Disease free (3)
Cardiovascular system disease (2)
Parkinson's disease (2)
Type 2 diabetes mellitus (2)
Breast cancer (2)
Myofibrillar myopathy (1)
Medulloblastoma (1)
Congenital disorder of glycosylation (1)
Lymphoma (1)
Brain cancer (1)

Technology Type

Mass Spectrometry (55)
Shotgun proteomics (37)
Bottom-up proteomics (12)
Mass spectrometry (10)
Data-independent acquisition (5)
Data-dependent acquisition (3)
SWATH MS (2)
Top-down proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
Mass spectrometry assay (1)
MSE (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Exactive (Thermo Scientific) (4)
Liquid Chromatography MS - negative - reverse phase (3)
Q Exactive HF-X (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Q Exactive Plus (1)
Orbitrap Fusion Lumos (1)
Liquid Chromatography MS - - - LTQ Orbitrap Velos (Thermo Scientific) (1)
LTQ Orbitrap Velos (Thermo Scientific) (1)
Bruker (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2025 (13)
2023 (10)
2021 (9)
2022 (8)
2024 (7)
2026 (6)
2019 (5)
2018 (4)
2020 (3)
2016 (2)
2014 (2)
2012 (1)
2015 (1)
2017 (1)

CHEBI ID

CHEBI:17562 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:17191 (4)
CHEBI:17596 (4)
CHEBI:20794 (3)
CHEBI:17822 (3)
CHEBI:28300 (3)
CHEBI:16750 (3)
CHEBI:16977 (3)
CHEBI:30832 (3)
CHEBI:15603 (3)
CHEBI:17895 (3)
CHEBI:16020 (3)
CHEBI:17295 (3)
CHEBI:30769 (3)
CHEBI:11951 (2)
CHEBI:178090 (2)
CHEBI:68467 (2)
CHEBI:16296 (2)
CHEBI:178092 (2)
CHEBI:19688 (2)
CHEBI:178091 (2)
CHEBI:19068 (2)
CHEBI:20129 (2)
CHEBI:19229 (2)
CHEBI:19228 (2)
CHEBI:72816 (2)
CHEBI:19702 (2)
CHEBI:89487 (2)

Metabolite Name

Cytidine (4)
Methionine (3)
Uridine (3)
4-methylcytidine (2)
2-methylguanosine (2)
2'-O-methylinosine (2)
2'-O-methyluridine (2)
7-methylguanosine (2)
6-methyladenosine (2)
8-methyladenosine (2)
2-methyladenosine (2)
3-methyluridine (2)
5-methyluridine (2)
3-methylpseudouridine (2)
1-methylpseudouridine (2)
3-methylcytidine (2)
5-methylcytidine (2)
L-isoleucine (2)
2'-O-methylguanosine (2)
N6,N6,N6-Trimethyl-L-lysine (2)
2'-O-methylcytidine (2)
Citric acid (2)
1-methylinosine (2)
1-methyladenosine (2)
Thymine (2)
2'-O-methyladenosine (2)
Pantothenic acid (2)
L-Glutamic acid (2)
Nicotinamide (2)
Oleamide (2)

Modification

N6 (4)
N6-dimethyl-L-lysine (4)
56.026215 (1)
59.036279 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)

Study type

Transcription profiling by array (1)

Release Date

2024 (11)
2021 (10)
2020 (10)
2022 (9)
2025 (8)
2018 (8)
2023 (6)
2017 (6)
2019 (4)
2016 (3)
2014 (2)
2013 (2)
2012 (1)
2026 (1)
2015 (1)

Lab affiliation

1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (5)
Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (5)
Department of environmental science and policy, University of Milan, Milan, Italy (2)
National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00 Brno, Czech Republic (1)
Central European Institute of Technology, Masaryk University, Brno, Czech Republic (1)
Department of Pharmacological and Biomolecular Sciences (DiSFeB) (1)
CEITEC Masaryk University (1)
Ruhr Universität Bochum Medizinisches Proteom-Center Zentrum für Proteindiagnostik (ProDi) (1)
Ruhr-University Bochum, Zentrum für Proteindiagnostik (ProDi), Medizinisches Proteom-Center (MPC) (1)
Ruhr-University Bochum, Medical Faculty, Medizinisches Proteom-Center, Medical Bioinformatics Ruhr-University Bochum, Medical Proteome Analysis, Center for Proteindiagnostics (PRODI) (1)
Mendel Center for Plant Genomics and Proteomics, Central European Institute of Technology, Brno, Czech Republic (1)
1-Department of protein Science, KTH Royal Institute of Technology, Stockholm, Sweden, 2-Science for Life Laboratory, Stockholm, Sweden (1)
Ruhr University Bochum Medical Faculty Medizinisches Proteom-Center (1)
University Ghent, VIB (1)
Ruhr University Bochum, Medical Faculty, Medizinisches Proteom-Center (1)
Faculty of Dentistry, Oral & Craniofacial Sciences, King’s College London (London, UK) (1)
Department of Pharmacological and Biomolecular Sciences, University of MIlan (1)
Johns Hopkins University Baltimore, MD 21218 USA (1)
Department of Chemistry, Umeå University, Umeå, Sweden (1)
Professor of Pharmacology, Department of Pharmacological and Biomolecular Sciences “Rodolfo Paoletti", University of Milan (1)
Group Leader, Structural and Computational Biology Unit, European Molecular Biology Laboratory Director of Research, MRC Toxicology Unit, University of Cambridge (1)
Professor of Pharmacology Head Laboratory of Pharmacology of CardioImmunoMetabolic Disorders. Department of Pharmacological and Biomolecular Sciences “Rodolfo Paoletti", Coordinator Doctorate School of Pharmacological and Biomolecular Sciences, Experimental and Clinical, University of Milan, Italy. (1)
VIB Center for Medical Biotechnology, VIB, Ghent Department of Biomolecular Medicine, Ghent University,Ghent (1)
VIB Center for Medical Biotechnology, VIB, Ghent Department of Biomolecular Medicine, Ghent University, Ghent (1)
Biotechnology, Applied Sciences, Delft University of Technology, The Netherlands (1)
Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Coupure links 653, B-9000 Ghent, Belgium (1)
State Key Laboratory of Microbial Metabolism, and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, China (1)
Toxicology Center, University of Saskatchewan, Canada (1)
Biosciences, Bioanalytical Research Labs, University of Salzburg, Salzburg, Austria (1)
Toxicology Centre, University of Saskatchewan, Canada (1)