Koch B B - OmicsDI

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Unknown (3247)
Transcriptomics (522)
Proteomics (249)
Genomics (93)
Metabolomics (44)
Models (5)
Other (2)
Multiomics (2)
Genomic (1)

Organisms

Homo sapiens (197)
Mycobacterium tuberculosis (115)
Mus musculus (76)
Mycobacterium tuberculosis H37Rv (49)
Vibrio cholerae (49)
Arabidopsis thaliana (8)
Tetranychus urticae (7)
Rattus norvegicus (7)
Danio rerio (7)
Oryctolagus cuniculus (5)
Mycobacterium tuberculosis CDC1551 (4)
Vibrio cholerae O1 str. C6706 (3)
Aliivibrio salmonicida LFI1238 (3)
Bacillus subtilis subsp. subtilis str. 168 (3)
Solanum lycopersicum (3)
Mycobacterium avium subsp. paratuberculosis K-10 (2)
Mycobacterium tuberculosis str. Erdman = ATCC 35801 (2)
Vibrio cholerae O1 biovar El Tor str. N16961 (2)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (2)
Macaca fascicularis (2)
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Caenorhabditis elegans (2)
Mycobacterium tuberculosis variant bovis BCG (1)
Atta vollenweideri (1)
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Papio cynocephalus (1)
Vibrio campbellii (1)
Colletotrichum higginsianum (1)
Cavia porcellus (1)
Parasteatoda tepidariorum (1)

Organisms

Mus musculus (11)
Homo sapiens (5)
Caenorhabditis elegans (1)
Balamuthia mandrillaris (1)

Repository

biostudies-arrayexpress (568)
pride (212)
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Tissue

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Disease

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Disease free (3)
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HIV-Tuberculosis with Immune Reconstitution Inflammatory Syndrome (1)
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Normal (1)
Gastrointestinal system disease (1)
Increased body weight (1)
Proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome (1)
Uveal melanoma (1)
Stress urinary incontinence (1)
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Kidney disease (1)
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Technology Type

Mass Spectrometry (212)
Shotgun proteomics (104)
Gel-based experiment (40)
Mass spectrometry (39)
Bottom-up proteomics (26)
Affinity purification coupled with mass spectrometry proteomics (22)
SWATH MS (11)
Chemical cross-linking coupled with mass spectrometry proteomics (11)
Data-independent acquisition (10)
Illumina 15K (8)
Data-dependent acquisition (8)
Mass spectrometry assay (5)
SRM/MRM (5)
Top-down proteomics (5)
All-ion fragmentation (3)
Immunopeptidomics (2)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
ILLUMINA, Illumina HiSeq 2000 (1)
HDMSE (1)

Instrument Platform

NextSeq 500 (18)
Illumina HiSeq 2000 (13)
Illumina NovaSeq 6000 (8)
Illumina MiSeq (7)
Illumina HiSeq 2500 (7)
Chemostat (3)
Bioanalyser (3)
Illumina NovaSeq X (3)
NextSeq 550 (3)
Nanodrop N1000 spectrophotometer (2)
Illumina Genome Analyzer IIx (2)
Bellco roll-in incubator (2)
Variable Atmosphere Incubator (2)
Ion Torrent Proton (2)
Illumina HiSeq 1500 (2)
Agilent TapeStation (1)
Element AVITI (1)
Qubit 2.0, Agilent 2100 (1)
Model 450 Fluidics Station/Affymetrix GeneChip Scanner 3000 TG System (1)
Agilent® 2100 Bioanalyzer Instrument (1)
None (1)
QuantStudioTM 12K Flex system (1)
Affymetrix 428 (1)
454 GS 20 (1)
Anaerobic workstation with airlock (1)
ScanArray 5000 [PerkinElmer] (1)
NanoDrop (1)
NextSeq 1000 (1)
None (1)
NA (1)

Publication Date

2014 (78)
2013 (77)
2010 (77)
2012 (62)
2015 (59)
2022 (51)
2023 (46)
2021 (42)
2016 (36)
2024 (35)
2026 (34)
2020 (32)
2007 (32)
2011 (31)
2019 (28)
2017 (25)
2025 (24)
2009 (24)
2008 (22)
2018 (21)
2005 (12)
2006 (10)
2004 (2)

UNIPROT ID/AC

P29965 (3)
O15111 (3)
Q01201 (2)
Q13490 (2)
Q13489 (2)
Q9UHD2 (2)
Q6GQQ9 (2)
Q13114 (2)
Q99558 (2)
Q12933 (2)
Q9Y6K9 (2)
O14920 (2)
P25963 (2)
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P31483 (1)
P38852 (1)

ENSEMBL ID

ENSG00000101017 (3)
ENSG00000175104 (1)
ENSG00000102245 (1)

CHEBI ID

CHEBI:78679 (3)
CHEBI:84596 (1)
CHEBI:26490 (1)
CHEBI:22194 (1)
CHEBI:25115 (1)
CHEBI:26806 (1)
CHEBI:27232 (1)
CHEBI:30867 (1)
CHEBI:68689 (1)
CHEBI:53071 (1)
CHEBI:77131 (1)
CHEBI:57768 (1)
CHEBI:57754 (1)
CHEBI:17464 (1)
CHEBI:64476 (1)
CHEBI:27949 (1)
CHEBI:64475 (1)
CHEBI:15669 (1)
CHEBI:17530 (1)
CHEBI:14261 (1)
CHEBI:16547 (1)
CHEBI:36090 (1)
CHEBI:15518 (1)
CHEBI:17745 (1)
CHEBI:28813 (1)
CHEBI:16710 (1)
CHEBI:17164 (1)
CHEBI:11892 (1)
CHEBI:17180 (1)
CHEBI:22653 (1)

Metabolite Name

Tryptophan (8)
Guanosine (8)
Phenylalanine (7)
Isoleucine (7)
Leucine (7)
Kynurenine (6)
Inosine (6)
Xanthine (6)
Adenosine (6)
Chitotriose (5)
Riboflavin (5)
Aspartic acid (5)
Xanthosine (5)
Proline (5)
Guanine (5)
Arginine (5)
Adenine (5)
Choline (5)
Glutamine (5)
Ornithine (5)
Tryptamine (4)
N-acetyl muramic acid (4)
4-aminobenzoic acid (4)
2,3-dihydroxypropane-1-sulfonate (4)
Serine (4)
Cytosine (4)
Citrulline (4)
Tyrosine (4)
Methionine (4)
Uracil (4)

First Public Date

2021 (6)
2017 (4)
2025 (3)
2024 (3)
2023 (3)
2014 (3)
2022 (2)
2020 (2)
2026 (1)
2019 (1)
2015 (1)
2013 (1)

Modelling Approach

Petri net (5)

Lab affiliation

Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (5)
Institute of Plant Genetics, Leibniz Universitaet Hannover, Germany (4)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (4)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (4)
1. Center for Molecular Medicine Cologne, University of Cologne, Robert-Koch-Str. 21, D- 50931 Cologne, Germany 2. Inst. for Neurophysiology, University of Cologne, Robert-Koch-Str. 39, D-50931 Cologne, Germany 3. CECAD; Cologne Cluster of Excellence in Cellular Stress Responses in Ageing-associated Diseases, University of Cologne, Joseph-Stelzmann-Str. 26, D-50931 Cologne, Germany (3)
Experimental Neurology, University Hospital, Frankfurt am Main, Germany (3)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (3)
Functional Proteomics Lab, Faculty of Biology, University of Freiburg, Germany (3)
Max-Planck-Institute for Multidisciplinary Sciences Bioanalytical Mass Spectrometry Group Am Fassberg 11 D-37077 Goettingen, Germany University Medical Center Goettingen Bioanalytics Institute for Clinical Chemistry Robert Koch Strasse 40 D-37075 Goettingen, Germany (3)
Department of Biochemistry, University of Utah, Salt Lake City, UT (2)
Robert Koch-Institute, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (2)
Institute of Microbiology (2)
Department of Inflammation and Immunity, Gastroenterology and Hepatology. Cleveland Clinic, Cleveland Ohio, USA (2)
University of Edinburgh (2)
Department of Biomedical and Clinical Sciences (BKV), Linköping University, Linköping, Sweden; Wallenberg Centre for Molecular Medicine (WCMM), Linköping University, Linköping, Sweden. (1)
Forschungslabor Fetale Programmierung, Klinik und Poliklinik für Kinder- und Jugendmedizin, Uniklinik Köln, Gebäude 44a, Robert-Koch Str. 16, 50931 Köln (1)
Department of Biological Engineering, Massachusetts Institute of Technology & Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (1)
Massachusetts Institute of Technology, Koch Inistitute for Integrative Cancer Research, Department of Biological Engineering (1)
Max Planck Institute for Multidisciplinary Sciences, Bioanalytical Mass Spectrometry Group, Am Fassberg 11, 37077 Göttingen, Germany University Medical Center Goettingen, Institute for Clinical Chemistry, Bioanalytics, Robert-Koch-Strasse 40, 37075 Göttingen, Germany (1)
Institute of Microbiology and Biotechnology, University of Bonn (1)
Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA (lab head) (1)
(Head, NHS Highly Specialised Mitochondrial Diagnostic Laboratory and Professor of Mitochondrial Pathology), Wellcome Centre for Mitochondrial Research, Newcastle University, UK (1)
Robert Koch Institute, Centre for Biological Threats and Special Pathogens, Proteomics and Spectroscopy (ZBS6), Berlin, Germany (1)
University Medical Center Hamburg-Eppendorf, Institute of Experimental Pharmacology and Toxicology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Max Planck Institute of Biochemistry Proteomics and Signal Transduction Am Klopferspitz 18 82152 Martinsried Germanry (1)
Medical School, Department of Biochemistry, University of Utah, Salt Lake City, USA (1)
Professor i molekylærbiologi og faglig leder av PROMEC Institutt for klinisk og molekylær medisin Fakultet for medisin og helsevitenskap geir.slupphaug@ntnu.no 72573076 91825455 Laboratoriesenteret, 231.05.034, Øya, Erling Skjalgssons g 1 (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (1)

Modification

Not available (2)
6.020129 (1)
45.029395 (1)
10.008269 (1)
-17.026549 (1)
42.010565 (1)
15.994915 (1)
58.005479 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (360)
RNA-seq of coding RNA (64)
ChIP-seq (32)
Unknown experiment type (18)
Methylation profiling by array (15)
ChIP-chip by tiling array (10)
Other (9)
ChIP-chip by array (8)
High-throughput sequencing (6)
Transcription profiling by tiling array (6)
DNA-seq (5)
Proteomic profiling by array (5)
RNA-seq of non coding RNA (5)
RNA-seq of total RNA (4)
Human - One-color microarray (3)
Methylation profiling by high throughput sequencing (3)
One-color microarray (2)
Animal - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
RIP-seq (2)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Ribo-seq (1)
MicroRNA profiling by array (1)

Release Date

2022 (399)
2021 (351)
2023 (347)
2025 (317)
2020 (286)
2024 (285)
2019 (218)
2018 (177)
2015 (176)
2016 (173)
2014 (171)
2017 (151)
2013 (134)
2012 (115)
2010 (113)
2011 (98)
2009 (64)
2008 (57)
2026 (46)
2007 (44)
2005 (27)
2006 (22)
2004 (12)
2003 (12)
2002 (7)
2001 (4)
2000 (4)
1999 (3)
1998 (1)
1996 (1)

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HSP90 promotes Burkitt lymphoma cell survival by maintaining tonic B cell receptor signaling

Burkitt’s lymphoma (BL) is an aggressive B-cell neoplasm that is currently treated by intensive chemotherapy in combination with anti-CD20 antibodies. Because of their toxicity, current treatment regimens are often not suitable for elderly patients or for patients in developing countries where BL is...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2017-03-29 | MSV000080781 | MassIVE

[How to assess the elimination of viral hepatitis B, C, and D in Germany? Outcomes of an interdisciplinary workshop].

Not available

S-EPMC7772161 | biostudies-literature

Evidence of very low hepatitis B virus prevalence in children and adolescents in Germany: National cross-sectional study, 2014-2017.

Not available

S-EPMC12529418 | biostudies-literature

Hepatitis B vaccination coverage in Germany: systematic review.

Not available

S-EPMC8364709 | biostudies-literature

ClpP2 proteasomes and SpxA1 determine Listeria monocytogenes tartrolon B hyper-resistance