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Transcriptomics[E-MTAB-407] GENCODE PCR-Seq Batch II
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch II, based on annotation from April 2009. ArrayExpr...
ORGANISM(S): Homo sapiens 
2010-12-04 | GSE25711 | GEO
Transcriptomics[E-MTAB-533] GENCODE Targeted Sequencing Batch III
As part of the RNASeq Genome Annotation Assessment Project (RGASP) selected novel gene model predictions were analysed with RT-PCR-Seq. ArrayExpress Release Date: 2011-03-01 Publication Title: GENCODE: producing a reference annotation for ENCODE Publication Author List: Harrow J, Denoeud F, Frankish...
ORGANISM(S): Homo sapiens Caenorhabditis elegans 
2011-07-14 | GSE30612 | GEO
Transcriptomics[E-MTAB-612] GENCODE PCR-Seq Batch I
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from Jul...
ORGANISM(S): Homo sapiens 
2011-07-14 | GSE30619 | GEO
TranscriptomicsGENCODE PCR-Seq Batch II
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is batch II, based on annotation from April 2009.
ORGANISM(S): Homo sapiens 
2010-11-01 | E-MTAB-407 | biostudies-arrayexpress
TranscriptomicsGENCODE Targeted Sequencing Batch III
As part of the RNASeq Genome Annotation Assessment Project (RGASP) selected novel gene model predictions were analysed with RT-PCR-Seq.
ORGANISM(S): Caenorhabditis elegans 
2011-03-01 | E-MTAB-533 | biostudies-arrayexpress
TranscriptomicsGENCODE PCR-Seq Batch I
As part of the ENCODE consortium the GENCODE project is producing a reference gene set through manual and automated gene prediction. Selected transcript models are verified experimentally by RT-PCR amplification followed by sequencing. This is the RNASeq part of batch I, based on annotation from Jul...
ORGANISM(S): Homo sapiens 
2011-05-01 | E-MTAB-612 | biostudies-arrayexpress
TranscriptomicsRNA-seq transcript assembly evaluation
To assess the performance of computational methods for exon identification, transcript reconstruction and expression level quantification from RNA-seq data, 24 protocol variants of 14 independent software programs (AUGUSTUS, Cufflinks, Exonerate, GSTRUCT, iReckon, mGene, mTim, NextGeneid, Oases, SLI...
ORGANISM(S): Drosophila melanogaster 
2013-07-15 | E-MTAB-1730 | biostudies-arrayexpress
GenomicsEGAS00001000016-sc-20110221 - samples
Gencode Exome Pilot
EGAD00001000003 | EGA
GenomicsThe GENCODE exome sequencing the complete human exome
We report the design of an extended set of targets for capturing the complete human exome, based on annotation from the GENCODE consortium. The extended set covers an addition 5,594 genes and 10.3 Mb compared to current sets which mainly target the CCDS database. The additional regions include poten...
EGAS00001000016 | EGA
GenomicsGencode Exome Pilot
Data Access Committee EGAC00001000001
EGAC00001000001 | EGA
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