Komatsu S S - OmicsDI

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Unknown (920)
Proteomics (57)
Transcriptomics (12)
Metabolomics (5)
Other (2)

Organisms

Mycobacterium tuberculosis SP7 (40)
Mycobacterium tuberculosis SP10 (40)
Mycobacterium tuberculosis SP13 (40)
Mycobacterium tuberculosis SP22 (40)
Chlamydomonas reinhardtii (40)
Enterococcus mundtii CRL35 (40)
Oncorhynchus tshawytscha (40)
Pseudomonas canadensis (40)
Pseudomonas aeruginosa PAO1H2O (40)
Human alphaherpesvirus 1 strain 17 (40)
Mycobacterium tuberculosis SP1 (40)
Marchantia polymorpha subsp. ruderalis (40)
Methylocystis sp. (40)
Exiguobacterium sp. SH31 (40)
Palaemonetes sp. common grass shrimp associated circular virus (40)
Amaranthus tricolor (40)
Spirochaeta sp. ELBA (40)
Clavibacter nebraskensis NCPPB 2581 (40)
Porites pukoensis (40)
Glycine max (5)
Mus musculus (4)
Homo sapiens (4)
Triticum aestivum (4)
Zea mays (2)
Oryza sativa (1)
Arabidopsis thaliana (1)
Cicer arietinum (1)
Catharanthus roseus (1)
Musa acuminata (1)
cellular organisms (1)

Repository

pride (40)
jPOST (14)
biostudies-arrayexpress (12)
MetaboLights (5)
PAXDB (3)
GPMDB (2)

Tissue

Plant cell (34)
Root (22)
Leaf (6)
Root tip (4)
Hypocotyl (4)
Cotyledon (3)
Primary root (2)
Shoot (2)
Embryo (2)
Endosperm (1)
Saliva (1)
Seed (1)
Macrophage (1)
Liver (1)

Disease

Wounds and Injuries (23)
Not Available (2)
Disease free (2)

Technology Type

Mass Spectrometry (40)
Shotgun proteomics (31)
Gel-free quantification method (4)
Mass spectrometry (3)
NMR spectroscopy (2)
Bottom-up proteomics (2)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
Gel-based quantification method (1)
Data-dependent acquisition (1)

Instrument Platform

Capillary electrophoresis MS - negative (3)
Capillary electrophoresis MS - positive (3)
NextSeq 500 (2)
Instrument (2)
Nuclear Magnetic Resonance (NMR) (1)
Nuclear Magnetic Resonance (NMR) - (1)

Publication Date

2016 (13)
2023 (8)
2015 (7)
2017 (7)
2014 (5)
2020 (5)
2018 (5)
2013 (4)
2024 (4)
2026 (3)
2021 (3)
2019 (3)
2010 (2)
2022 (2)
2012 (1)
2009 (1)
2025 (1)

UNIPROT ID/AC

RUBA_WHEAT (2)
4565.Traes_7AL_0A92A2224.1 (2)
RK9_WHEAT (2)
CB21_WHEAT (2)
4565.Traes_3DL_CB9CA6DF6.1 (2)
4565.Traes_4AS_254B6D654.4 (2)
A0A3B6KGD4_WHEAT (2)
TRXM_WHEAT (2)
A0A3B6FF75_WHEAT (2)
4565.Traes_4DS_2F98108D7.1 (2)
4565.Traes_4DS_CB4EF3DEB.1 (2)
4565.Traes_7DL_84549CB3E.1 (2)
R9W6A6_WHEAT (2)
4565.Traes_5BS_C64E893BD.1 (2)
A0A3B6TKM4_WHEAT (2)
4565.Traes_7DL_5320E59A61.1 (2)
4565.Traes_4AL_45CFFFB35.1 (2)
A0A3B5Z4G2_WHEAT (2)
4565.Traes_4DS_9C71814E9.1 (2)
A0A3B6RQD1_WHEAT (2)
4565.Traes_4DS_88B2B1D0C.1 (2)
HMGL_WHEAT (2)
A0A3B6SCE8_WHEAT (2)
A0A3B6GQZ6_WHEAT (2)
PSBA_WHEAT (2)
4565.Traes_4DS_2ABE97FD8.1 (2)
A0A3B6NVD9_WHEAT (2)
A0A3B6NJS8_WHEAT (2)
W5C3H4_WHEAT (2)
A0A077RST2_WHEAT (2)

CHEBI ID

CHEBI:16811 (5)
CHEBI:26986 (5)
CHEBI:27266 (5)
CHEBI:15724 (5)
CHEBI:28044 (5)
CHEBI:15354 (5)
CHEBI:15891 (5)
CHEBI:15428 (5)
CHEBI:25094 (5)
CHEBI:15741 (5)
CHEBI:25017 (5)
CHEBI:78320 (5)
CHEBI:18237 (5)
CHEBI:16449 (5)
CHEBI:17202 (4)
CHEBI:30776 (4)
CHEBI:20067 (4)
CHEBI:30768 (4)
CHEBI:16704 (4)
CHEBI:18132 (4)
CHEBI:24898 (4)
CHEBI:17822 (4)
CHEBI:16199 (4)
CHEBI:17568 (4)
CHEBI:17418 (4)
CHEBI:32805 (4)
CHEBI:30772 (4)
CHEBI:17368 (4)
CHEBI:27570 (4)
CHEBI:18127 (4)

Metabolite Name

Trimethylamine N-oxide (2)
Phenylalanine (2)
Choline (2)
Valine (2)
Threonine (2)
Taurine (2)
FAD (2)
NADP+ (2)
Deamido-NAD+ (2)
NAD+ (2)
CMP-N-acetylneuraminate (2)
GDP-mannose (2)
ADP-glucose (2)
UDP-glucuronate (2)
UDP-glucose (2)
TDP-glucose (2)
CDP-choline (2)
XTP (2)
ITP (2)
DGTP (2)
DITP (2)
DATP (2)
UTP (2)
CTP (2)
DTTP (2)
DUTP (2)
DCTP (2)
Glycocholate (2)
Adenylosuccinate (2)
Folate (2)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA from single cells (2)
RNA-seq of coding RNA (2)

Release Date

2022 (129)
2025 (100)
2021 (100)
2023 (95)
2024 (71)
2020 (66)
2019 (61)
2018 (56)
2016 (45)
2015 (41)
2017 (36)
2014 (33)
2013 (18)
2026 (16)
2012 (15)
2009 (11)
2010 (9)
2011 (8)
2008 (6)
2004 (3)
2001 (3)
2007 (2)
2003 (2)
2002 (2)
2000 (2)
2006 (1)
2005 (1)

Lab affiliation

NARO Institute of Crop Science (13)
NARO Institute of Crop Science, Tsukuba, Japan (3)
Institute of Crop Science (2)
NARO Institute of Crop Science, National Agriculture and Food Research Organization (2)
NARO Institute of Crop Science, Taukuba, Japan (2)
Juntendo University (2)
College of Agronomy and Biotechnology, China Agricultural University, Beijing, China (2)
National Institute of Crop Science (2)
NARO Institute of Crop Science ; University of Tsukuba (1)
Department of Biochemistry and Molecular Biology, Federal University of Ceara, CE, Brazil (1)
National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan (1)
National Institute of Crop, NARO, Japan (1)
University of Tsukuba (1)
NARO, National Institute of Crop Science, Tsukuba 305-8518, Japan (1)
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan (1)
National Institute of Crop Science, Tsukuba, Japan (1)
Chief Scientist, National Institute of Crop Science, Tsukuba, Japan (1)
Department of Physiology,Juntendo University Graduate School of Medicine (1)
NARO Institute of Crop Science, Tsukuba, Japan. (1)
UCSF (1)

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Three new species of the genus Falcileptoneta Komatsu, 1970 (Araneae, Leptonetidae) from Korea.

Not available

S-EPMC6711939 | biostudies-literature

A randomized phase II study of S-1 plus oral leucovorin versus S-1 monotherapy in patients with gemcitabine-refractory advanced pancreatic cancer.

Not available

S-EPMC4769993 | biostudies-literature

Comparison of expression in PAM765-transgenic vs GUS-transgenic Arabidopsis

PAM765 encodes the secretory protein of a phytopathogenic bacterium, Candidatus Phytoplasma asteris. To investigate the influence of PAM765 expression on the transcription profile of a host plant, we identified differences in the gene expression profiles between PAM765-transgenic and GUS-transgenic ...

ORGANISM(S): Arabidopsis thaliana

2010-04-09 | E-GEOD-14564 | biostudies-arrayexpress

ATM regulates Cdt1 stability during the unperturbed S phase to prevent re-replication.

Not available

S-EPMC3956543 | biostudies-literature

Cumulative total S-1 dose in adjuvant chemotherapy affects the long-term outcome following curative gastrectomy for gastric cancer.

Not available

S-EPMC8167698 | biostudies-literature

A randomized, double-blind, phase II study of oral histone deacetylase inhibitor resminostat plus S-1 versus placebo plus S-1 in biliary tract cancers previously treated with gemcitabine plus platinum-based chemotherapy.

Not available

S-EPMC7957161 | biostudies-literature

Temporary reduction of immunosuppression enhances production of anti-S antibody against severe acute respiratory syndrome coronavirus 2 after vaccination in kidney transplant recipients.

Not available

S-EPMC9538803 | biostudies-literature

Sargassum horneri C. Agardh space capacity estimation reveals that thallus surface area varies with wet weight.

Not available

S-EPMC6007897 | biostudies-literature

Gene expression profiling of triple negative breast cancer, normal ductal cells, and normal tissues

To identify novel molecular targets for triple negative breast cancer (TNBC), we have employed whole genome microarray expression profiling. We purified 30 surgically resected breast cancer tissue diagnosed triple negative by means of immunohistochemical staining and 13 normal mammary ductal cells...

ORGANISM(S): Homo sapiens

2012-12-21 | E-GEOD-38959 | biostudies-arrayexpress

1H NMR metabolomic and transcriptomic analyses reveal urinary metabolites as biomarker candidates in response to protein undernutrition in adult rats

BACKGROUND: Protein undernutrition is prevalent mainly among elderly people, and it could develop diseases such as sarcopenia. Urinary metabolites may become biomarkers reflecting protein undernutrition, but this has been insufficiently investigated.

OBJECTIVE:

2021-05-27 | MTBLS1452 | MetaboLights

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