Koo H H - OmicsDI

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Unknown (961)
Transcriptomics (46)
Proteomics (25)
Genomics (7)
Metabolomics (7)
Models (2)
Multiomics (2)

Organisms

Mus musculus (22)
Andropogon gerardi (20)
Bacteria (20)
Canis lupus familiaris (20)
Chromatiales bacterium OalgGamma1 (20)
Clavibacter nebraskensis NCPPB 2581 (20)
Cnidaria (20)
Ensifer adhaerens (20)
Fasciola (20)
Human alphaherpesvirus 1 strain 17 (20)
Human alphaherpesvirus 1 strain KOS (20)
Human betaherpesvirus 5 (20)
Human herpesvirus 2 strain 186 (20)
Mesocricetus auratus (20)
Miscanthus x giganteus (20)
Mus musculus (20)
Panicum virgatum (20)
Platyhelminthes (20)
Pseudomonas aeruginosa PA103 (20)
Rattus norvegicus (20)
Rattus rattus (20)
Homo sapiens (15)
Arabidopsis thaliana (6)
Streptococcus mutans UA159 (3)
Lepidium sativum (2)
Curcuma longa (1)
Zingiber officinale (1)
Oryza sativa (1)
Rattus norvegicus (1)
Sus scrofa (1)

Repository

biostudies-arrayexpress (50)
pride (20)
MetaboLights (6)
EGA (3)
BioModels (2)
MassIVE (2)
PeptideAtlas (2)
GNPS (1)
ENA (1)

Tissue

Cell culture (4)
Epithelial cell (3)
Hepatocyte (3)
Brain (2)
Liver (2)
B cell (1)
Blood serum (1)
Cell suspension culture (1)
Kidney cell (1)
Skeletal muscle (1)

Disease

Prostate adenocarcinoma (3)
Liver cancer (2)
Type 2 diabetes mellitus (2)
Colon cancer (1)
Dementia (1)
Dental caries (1)
Multiple sclerosis (1)
Parkinson's disease (1)

Technology Type

Mass Spectrometry (20)
Shotgun proteomics (11)
Mass spectrometry (6)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (2)
Bottom-up proteomics (2)
Top-down proteomics (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 2500 (4)
LTQ Orbitrap Velos (3)
Tandem Gas Chromatography MS - (2)
Liquid Chromatography MS - negative - reverse phase (2)
Liquid Chromatography MS - positive - reverse phase (2)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 4000 (1)
Orbitrap Fusion Lumos (1)
LTQ FT (1)
LTQ Orbitrap Elite (1)
Orbitrap Fusion (1)
ISQ LT (Thermo) (1)
Tandem Gas Chromatography MS - positive (1)
Q Exactive (1)

Publication Date

2010 (12)
2012 (9)
2016 (6)
2011 (6)
2023 (6)
2025 (6)
2024 (5)
2014 (5)
2021 (4)
2019 (4)
2009 (3)
2020 (3)
2026 (3)
2022 (2)
2015 (2)
2013 (2)
2007 (2)
2017 (1)
2006 (1)
2018 (1)

UNIPROT ID/AC

A0ELI5 (2)
A0EQY3 (2)
A0JNY3 (2)
A0JNY7 (2)
A0MNP4 (2)
A0PJK7 (2)
A0PK78 (2)
A1A596 (2)
A1E5T5 (2)
A1L013 (2)
A1L0U3 (2)
A1L0U6 (2)
A1L0V6 (2)
A1L347 (2)
A1L366 (2)
A1L3B6 (2)
A1L3B8 (2)
A2A432 (2)
A2A468 (2)
A2A4P0 (2)
A2A4Z0 (2)
A2A547 (2)
A2A5N2 (2)
A2A5R2 (2)
A2A5Z6 (2)
A2A615 (2)
A2A654 (2)
A2A6A1 (2)
A2A716 (2)
A2A791 (2)

ENSEMBL ID

ENSMUSG00000021039 (2)
ENSMUSG00000027651 (2)
ENSMUSG00000093896 (2)
ENSMUSG00000094075 (2)
ENSMUSG00000094797 (2)
ENSMUSG00000094930 (2)
ENSMUSG00000095442 (2)
ENSMUSG00000096410 (2)
ENSMUSG00000098557 (2)
ENSMUSP00000141097 (2)
ENSMUSP00000141637 (2)
ENSMUSG00000072849 (1)
ENSMUSG00000076508 (1)
ENSMUSG00000076532 (1)
ENSMUSG00000076586 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000076731 (1)
ENSMUSG00000093894 (1)
ENSMUSG00000094356 (1)
ENSMUSG00000094502 (1)
ENSMUSG00000094509 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094689 (1)
ENSMUSG00000095210 (1)
ENSMUSG00000095416 (1)
ENSMUSG00000095753 (1)
ENSMUSG00000096326 (1)
ENSMUSG00000098814 (1)
ENSMUSG00000103290 (1)

CHEBI ID

CHEBI:17154 (5)
CHEBI:16708 (4)
CHEBI:17754 (4)
CHEBI:16610 (4)
CHEBI:18107 (4)
CHEBI:17821 (4)
CHEBI:17568 (4)
CHEBI:16235 (4)
CHEBI:15428 (4)
CHEBI:17368 (4)
CHEBI:5445 (3)
CHEBI:17256 (3)
CHEBI:28997 (3)
CHEBI:17768 (3)
CHEBI:26271 (3)
CHEBI:17780 (3)
CHEBI:18183 (3)
CHEBI:28875 (3)
CHEBI:18257 (3)
CHEBI:16958 (3)
CHEBI:17148 (3)
CHEBI:17509 (3)
CHEBI:15971 (3)
CHEBI:18050 (3)
CHEBI:16040 (3)
CHEBI:17172 (3)
CHEBI:15318 (3)
CHEBI:17203 (3)
CHEBI:16467 (3)
CHEBI:17053 (3)

Metabolite Name

L-Histidine (3)
L-Proline (3)
Spermidine (3)
Guanine (3)
L-Isoleucine (3)
L-Methionine (3)
L-Tyrosine (3)
Ethanolamine (2)
Diacetone alcohol (2)
Acetophenone (2)
Glycine (2)
L-Cysteine (2)
Glycerol (2)
Thymine (2)
Pyroglutamic acid (2)
Nicotinamide riboside (2)
N-Acetylglutamic acid (2)
Lumichrome (2)
L-Aspartic acid (2)
L-Formylkynurenine (2)
Putrescine (2)
Ornithine (2)
L-Threonine (2)
Guanosine monophosphate (2)
Nicotinamide (2)
Stearic acid (2)
Niacinamide (2)
L-Arginine (2)
L-Lysine (2)
Adenosine monophosphate (2)

IsPrivate

False (2)

First Public Date

2024 (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (33)
RNA-seq of coding RNA (5)
ChIP-seq (3)
RNA-seq of coding RNA from single cells (3)
Comparative genomic hybridization by array (2)
Transcription profiling by tiling array (1)
ChIP-chip by array (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)

Release Date

2021 (124)
2023 (123)
2022 (103)
2025 (102)
2024 (92)
2020 (89)
2016 (57)
2019 (50)
2017 (49)
2018 (48)
2015 (33)
2013 (24)
2012 (23)
2014 (21)
2011 (20)
2010 (20)
2026 (12)
2009 (9)
2007 (7)
2005 (2)
2006 (1)
2008 (1)
2003 (1)

Lab affiliation

School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (3)
Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB) (2)
Assistant Professor, Faculty of Dentistry, National University of Singapore (1)
Assistant Profssor, School of Biomedical Sciences and Department of Pathology, School of Clinical Medicine, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Pokfulam Road, Hong Kong, P. R. China (1)
CEITEC—Central European Institute of Technology, Masaryk University, Brno, Czech Republic (1)
DZNE Munich Neuroproteomics Feodor-Lynen Str. 17 81377 Munich Germany (1)
Department of Applied Chemistry, Institute of Natural Science, Global Center for Pharmaceutical Ingredient Materials, Kyung Hee University, Yongin, 17104, South Korea. (1)
Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, South Korea KAIST Stem Cell Center, KAIST, Daejeon 34141, South Korea (1)
Department of Chemistry, Korea University (1)
Department of Chemistry, Scripps Research La Jolla, USA (1)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (1)
Department of Microbiology, Immunology, and Molecular Genetics (MIMG), Quantitative & Computational Biosciences (QCBio), University of California, Los Angeles, LA, USA (1)
Korea Basic Science Institute (1)
Professor, Gilula Chair in Chemical Biology, The Department of Chemistry, Skaggs Institute for Chemical Biology, The Scripps Research Institute 10550 North Torrey Pines Rd, La Jolla, CA 92037 (1)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (1)
The Scripps Research Institute (1)
The University of Queensland (1)

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No Clinically Important Differences in Thigh Pain or Bone Loss Between Short Stems and Conventional-length Stems in THA: A Randomized Clinical Trial.

Not available

S-EPMC8083837 | biostudies-literature

GiantsosAdams2013 - Growth of glycocalyx under static conditions

Giantsos-Adams2013 - Growth of glycocalyx under static conditions This model is described in the article: Heparan Sulfate Regrowth Profiles Under Laminar Shear Flow Following Enzymatic Degradation. Giantsos-Adams KM, Koo AJ, Song...

2024-09-02 | BIOMD0000000830 | BioModels

Giantsos-Adams2013 - Growth of glycocalyx under static conditions

2016-09-28 | MODEL1609100001 | BioModels

Metabolomics Insights in Early Childhood Caries

Dental caries is characterized by a dysbiotic shift at the biofilm-tooth surface interface, yet comprehensive biochemical characterizations of the biofilm are scant. We used metabolomics to identify biochemical features of the supragingival biofilm associated with early childhood caries (ECC) preval...

2021-01-29 | MTBLS2215 | MetaboLights

Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface.

Not available

S-EPMC3156286 | biostudies-literature

EMT-induced stemness and tumorigenicity are fueled by an oncogenic EGF/Ras pathway

Pre-EMT GIF14 cells treated with TGF-M-NM-21 Total RNA obtained from isolated GIF-14 cells from untreated and TGF-M-NM-21-treated sample

ORGANISM(S): Mus musculus

2014-02-19 | E-GEOD-44055 | biostudies-arrayexpress

Biofilm-isolated Listeria monocytogenes exhibits reduced systemic dissemination at the early (12-24 h) stage of infection in a mouse model.

Not available

S-EPMC7870835 | biostudies-literature

Redetermination of phenyl-hydrazinium chloride.