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GenomicsIntragenic enhancers act as alternative promoters
This SuperSeries is composed of the following subset Series: GSE26877: Nprl3 is Required for Normal Development of the Cardiovascular System GSE27918: Genome-wide maps of chromatin state in mouse erythroid cells. GSE27919: Genome-wide map of DNaseI hypersensitivity in mouse erythroid cells. GSE27920...
ORGANISM(S): Mus musculus 
2012-01-30 | E-GEOD-27921 | biostudies-arrayexpress
TranscriptomicsTranscriptiome of mouse erythroid cells (part2) poly(A)-
We report genome-wide maps of transcription in mouse erythroid cells. We used an approach to survey poly(A)+ (mRNA) (Transcriptiome of mouse erythroid cells (part1) GSE26877) and non-polyadenylated RNA separately. This provides an alternative framework for comprehensive transcriptome profiling in ma...
ORGANISM(S): Mus musculus 
2012-01-30 | E-GEOD-27920 | biostudies-arrayexpress
GenomicsGenome-wide maps of chromatin state in mouse erythroid cells.
We generated genome-wide chromatin state and RNA Polymerase II binding maps in mouse erythroid cells by ChIP-Seq. Examination of 4 different histone modifications (H3K4me3, H3K4me1, H3K27me3, H3K27ac) and RNA Polymerase II (RNAP2) binding in mouse erythroid cells (Ter119+).
ORGANISM(S): Mus musculus 
2012-01-30 | E-GEOD-27918 | biostudies-arrayexpress
GenomicsGenome-wide map of DNaseI hypersensitivity in mouse erythroid cells.
We generated genome-wide maps of DNaseI hypersensitivity in mouse erythroid cells by DNase-Seq. Examination of DNaseI hypersensitivity in mouse erythroid cells.
ORGANISM(S): Mus musculus 
2012-01-30 | E-GEOD-27919 | biostudies-arrayexpress
GenomicsGenome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells (ChIP-seq)
We report that hyperglycemia-mediated induction of genes and pathways associated to endothelial dysfunction occur through modulation of acetylated H3K9/K14 inversely correlated with methyl-CpG content. Examination of H3K9/K14 histone acetylation and DNA methylation in hyperglycemic conditions.
ORGANISM(S): Homo sapiens 
2011-06-01 | E-GEOD-29251 | biostudies-arrayexpress
TranscriptomicsTranscript profiling of swp73b-1 Arabidopsis thaliana
SWP73 subunits of SWI/SNF chromatin remodeling complexes (CRCs) are involved in key developmental pathways in Arabidopsis. We found, using microarray that inactivation of SWP73B caused altered expression of genes belonging to various regulatory pathways, including leaf and flower development. On the...
ORGANISM(S): Arabidopsis thaliana 
2015-05-12 | E-MTAB-3558 | biostudies-arrayexpress
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