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GenomicsChIP-seq analysis with an antibody directed against the human Rad21 protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1.
Peaks were identified in both the human and viral (EBV (Human Herpesvirus 4; GenBank accession KF717093.1) genome.
ORGANISM(S): Homo sapiens 
2021-06-22 | E-MTAB-8424 | biostudies-arrayexpress
GenomicsChIP-seq analysis with an antibody directed against the human H3K4me1 protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1.
Peaks were identified in both the human and viral (EBV (Human Herpesvirus 4 GenBank accession KF717093.1) genome.
ORGANISM(S): Homo sapiens 
2021-02-07 | E-MTAB-8425 | biostudies-arrayexpress
GenomicsChIP-seq analysis with an antibody directed against the human H3K4me3 protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1.
Peaks were identified in both the human and viral (EBV (Human Herpesvirus 4; GenBank accession KF717093.1) genome.
ORGANISM(S): Homo sapiens 
2021-06-22 | E-MTAB-8419 | biostudies-arrayexpress
TranscriptomicsChIP-seq analysis with an antibody directed against the H3K27me3 protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1.
Peaks were identified in both the human and viral (EBV (Human Herpesvirus 4; GenBank accession KF717093.1) genome.
ORGANISM(S): Homo sapiens 
2021-06-22 | E-MTAB-8423 | biostudies-arrayexpress
TranscriptomicsChIP-seq analysis with an antibody directed against the human SMC1 protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1
Peaks were identified in both the human and viral (EBV (Human Herpesvirus 4; GenBank accession KF717093.1) genome.
ORGANISM(S): Homo sapiens 
2021-06-22 | E-MTAB-8428 | biostudies-arrayexpress
TranscriptomicsChIP-seq analysis with an antibody directed against the human H3K27ac protein in Raji cells (Genbank: KF717093.1) prior to and post induction of BZLF1.
ChIP peaks were identified in both the human and viral genomes (genome assembly GRCh37 (hg19) and Epstein-Barr virus, Human Herpesvirus 4; GenBank accession KF717093.1).
ORGANISM(S): Homo sapiens 
2021-06-22 | E-MTAB-8421 | biostudies-arrayexpress
TranscriptomicsRNA-seq in Raji cells with inducible BZLF1 prior to and after induction of EBV's lytic cycle by doxycycline
(i) RNA transcripts of Raji iBZLF1 cells (https://www.biorxiv.org/content/10.1101/573659v1) were compared between non-induced cells and cells induced with doxycycline (100 ng/ ml) for 6 h. Human (Hg19) as well as viral (EBV, Raji KF717093.1) transcripts were analyzed. Artificial ERCC Spike-ins (Ther...
ORGANISM(S): Homo sapiens 
2019-01-01 | E-MTAB-7820 | biostudies-arrayexpress
TranscriptomicsChIP-seq against BZLF1 in DG75 cells (EBV-negative, human Burkitt lymphoma cell line)
The parental DG75 cell line is EBV negative and cannot express the viral BZLF1 protein, thus, this set of experiments served as a negative control. After ChIP, peaks were identified in both the human and viral (EBV (Human Herpesvirus 4) genome KF717093.1) genome. Only few peaks were identified. Expe...
ORGANISM(S): Homo sapiens 
2019-04-05 | E-MTAB-7821 | biostudies-arrayexpress
TranscriptomicsChange in gene expression in Chlamydomonas reinhardtii upon heat shock
This was an accompanying experiment. Previously, the expression of genes hsp70A and hsp70B had been established as being tetrapyrrole-dependent (Kropat et al., 1997, 2000). Since both are well-known heat-shock proteins, we performed a one-step heat shock treatment by shifting the temperatures from 2...
ORGANISM(S): Chlamydomonas reinhardtii 
2011-03-02 | E-GEOD-20859 | biostudies-arrayexpress
TranscriptomicsExpression profiling of Moraxella catarrhalis RH4 during in vitro growth in brain heart infusion (BHI) medium
Transcriptome analysis of M. catarrhalis RH4 predicted coding sequences and clustered regularly interspaced short palindromic repeats (CRISPRs) regions. The results described in this study are further discussed in De Vries, S.P.W., van Hijum, S.A.F.T., Schueler, W., Riesbeck, K., Hays, J.P., Hermans...
ORGANISM(S): Moraxella catarrhalis RH4 
2010-05-07 | E-GEOD-21632 | biostudies-arrayexpress
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