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TranscriptomicsTranscription profiling of human cells transfected with a miR-34a LNA inhibitor to investigate its role in oncogene-induced senescence
To understand the role of miR-34a in oncogene-induced senescence, we tested global mRNA expression using microarrays of TIG3 TERT/ deltaB-RAF:ER cells transfected with a miR-34a LNA inhibitor or a scrambled control LNA in the presence or absence of deltaB-RAF activation.
TIG3 TERT/ deltaB-RAF:ER ...
ORGANISM(S): Homo sapiens 
2009-08-01 | E-MEXP-2241 | biostudies-arrayexpress
ProteomicsBEMAP analysis of glycosylated YghJ
In the present study we have further investigated the extent of YghJ glycosylation and coupled this inherent O-linked protein glycosylation to an increased antigenic potential of YghJ. We have expressed and purified glycosylated YghJ from the canonical ETEC strain H10407 and performed an in depth BE...
ORGANISM(S): Escherichia coli 
2021-08-09 | PXD025876 | Pride
Bemap Yghj E. coli Etec 
GenomicsThe Danish Reference Genome - GenomeDenmark data access committee
Data Access Committee EGAC00001000562
EGAC00001000562 | EGA
UnknownGT61 β-1,2-xylosyltransferases define a conserved xylan modification in gymnosperm and Arabidopsis primary cell walls.
Not available
S-EPMC12579940 | biostudies-literature
TranscriptomicsChromatin immunoprecipitation of human HEK293 cells with flag-tagged IMP1 antibody
Isolation of IMP1 bound mRNAs. Flag-tagged IMP1 was expressed in HEK293 cells. Flag tagged IMP1 was immunoprecipitated and mRNAs isolated. As controls HEK293 cells that do not express Flag-tagged IMP1 was included.
ORGANISM(S): Homo sapiens 
2006-12-31 | E-MEXP-841 | biostudies-arrayexpress
UnknownExpression profile of miR-101 transfection in MCF-7 cells compared with scramble control
Not available
ORGANISM(S): Homo sapiens 
S-ECPF-GEOD-31397 | biostudies-other
TranscriptomicsAlternative poladenylation of tumor suppressor genes in small intestinal neuroendocrine tumors
The tumorigenesis of small intestinal neuroendocrine tumors (NETs) is poorly understood. Recent studies have associated alternative polyadenylation with proliferation, cell transformation and cancer. Polyadenylation is the process in which the pre-mRNA is cleaved at a polyA site and a polyA tail is ...
ORGANISM(S): Homo sapiens 
2014-04-10 | E-GEOD-56657 | biostudies-arrayexpress
TranscriptomicsExpression profile of miR-101 transfection in MCF-7 cells compared with scramble control
Autophagy is an evolutionarily conserved mechanism of cellular self-digestion in which proteins and organelles are degraded through delivery to lysosomes. Defects in this process are implicated in numerous human diseases including cancer. To further elucidate regulatory mechanisms of autophagy, we p...
ORGANISM(S): Homo sapiens 
2011-08-19 | E-GEOD-31397 | biostudies-arrayexpress
Genomicsena-DATASET-DTU-19-07-2017-19:09:46:884-206 - samples
The MHC vcf call set was generated using a modified AsmVar and BayesTyper pipeline. In contrast to the original pipeline, where variant calling is performed using alignment of collapsed assemblies to a reference genome, the MHC call set was produced using alignment of phased MHC haplotypes. Two iter...
EGAD00001003455 | EGA
TranscriptomicsDrosophila Imp iCLIP identifies an RNA assemblage co-ordinating F-actin formation
In this study, we employed a combination of RIP-seq and short- and long-wave iCLIP technologies to identify transcripts associated with cytoplasmic RNPs containing the RNA-binding protein Drosophila Imp. We also made a Imp knockdown vs luciferase control experiment. Two biological iCLIP-seq, as well...
ORGANISM(S): Drosophila melanogaster 
2015-05-27 | E-GEOD-62997 | biostudies-arrayexpress
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