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Unknown
(47941)
Genomics
(1115)
Transcriptomics
(501)
Proteomics
(232)
Metabolomics
(32)
Models
(19)
Other
(8)
Genomic
(1)
Multiomics
(1)
Organisms
Homo sapiens
(344)
Mus musculus
(107)
Rattus norvegicus
(21)
Drosophila melanogaster
(16)
Arabidopsis thaliana
(15)
Triticum aestivum
(12)
Escherichia coli str. K-12 substr. MG1655
(10)
Zea mays
(10)
Caenorhabditis elegans
(9)
Schizosaccharomyces pombe
(8)
Saccharomyces cerevisiae
(8)
Geobacter sulfurreducens PCA
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Sus scrofa
(7)
Rhizobium leguminosarum
(6)
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cellular organisms
(3)
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(3)
Aspergillus fumigatus
(3)
Salmo salar
(3)
Oryctolagus cuniculus
(2)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
(2)
Blastocladiella emersonii
(2)
Cricetinae
(1)
Cavia porcellus
(1)
Organisms
Homo sapiens
(169)
Mus musculus
(151)
Drosophila melanogaster
(15)
Pseudomonas aeruginosa
(10)
Saccharomyces cerevisiae
(7)
Escherichia coli
(6)
Sphingomonas sp. LH128
(4)
Megophrys montana
(4)
Nothobranchius furzeri
(4)
Solea solea
(4)
Arabidopsis thaliana
(4)
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(4)
Hiodon alosoides
(3)
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(3)
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(3)
Aspergillus niger
(3)
Klebsiella pneumoniae
(3)
Staphylococcus aureus
(3)
Rattus norvegicus
(3)
Gallus gallus
(3)
Saxifraga granulata
(2)
Bombus terrestris
(2)
Erythranthe guttata
(2)
Thermus thermophilus HB8
(2)
invertebrate gut metagenome
(2)
Locusta migratoria
(2)
Ralstonia pickettii
(2)
Bacillus altitudinis
(2)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
(2)
Varroa destructor
(2)
Repository
ENA
(983)
biostudies-arrayexpress
(524)
pride
(186)
EGA
(90)
geo
(29)
MetaboLights
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jPOST
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iProX
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MassIVE
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(3)
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(2)
dbGaP
(1)
EVA
(1)
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(1)
LINCS
(1)
Tissue
Cell culture
(56)
Epithelial cell
(15)
Brain
(11)
Liver
(8)
Blood serum
(7)
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(6)
Permanent cell line cell
(6)
Root
(5)
Whole body
(5)
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(4)
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(4)
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(4)
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(3)
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(3)
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(2)
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(2)
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(2)
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(2)
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(2)
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(2)
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(2)
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(2)
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(2)
Heart
(2)
Leaf
(2)
Plant cell
(2)
Primary cell
(2)
Sperm
(2)
Cultured cells
(1)
Liver
(1)
Disease
Breast cancer
(7)
Disease free
(4)
Alzheimer's disease
(2)
Amyotrophic lateral sclerosis
(2)
Melanoma
(2)
Noonan syndrome
(2)
Paraganglioma
(2)
Renal cell carcinoma
(2)
Rheumatoid arthritis
(2)
ARR7ox-4-11
(1)
Teratozoospermia and infertility
(1)
Ductal carcinoma
(1)
T-cell acute lymphoblastic leukemia
(1)
Coronary artery disease
(1)
Wilms tumour
(1)
Normal
(1)
Not Available
(1)
Alzheimers disease
(1)
Parkinsons disease
(1)
Acute leukemia
(1)
Amyotrophic lateral sclerosis type 1
(1)
Colorectal cancer
(1)
Fibromyalgia
(1)
Fungal infectious disease
(1)
Head and neck cancer
(1)
Hepatocellular carcinoma
(1)
Kidney cancer
(1)
Leigh disease
(1)
Leishmaniasis
(1)
Limb-girdle muscular dystrophy
(1)
Technology Type
Mass Spectrometry
(190)
Shotgun proteomics
(110)
Affinity purification coupled with mass spectrometry proteomics
(30)
Bottom-up proteomics
(18)
Mass spectrometry
(17)
Data-dependent acquisition
(16)
Gel-based experiment
(10)
Data-independent acquisition
(9)
Mass spectrometry assay
(8)
Top-down proteomics
(8)
ESI
(4)
MSE
(3)
All-ion fragmentation
(2)
Chemical cross-linking coupled with mass spectrometry proteomics
(2)
SRM/MRM
(2)
SWATH MS
(2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten
(1)
Illumina HiSeq 2500, ILLUMINA
(1)
HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO
(1)
Illumina HiSeq 2500
(1)
Illumina HiSeq 2000
(1)
Illumina MiSeq
(1)
Fluorescence intensity
(1)
KINOMEscan
(1)
Mass spectrometry imaging
(1)
Olink affinity proteomics
(1)
Instrument Platform
Illumina HiSeq 2000
(12)
Illumina HiSeq 4000
(12)
Illumina NovaSeq 6000
(11)
NextSeq 500
(9)
Illumina HiSeq 2500
(3)
BD Influx sorter
(2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler)
(2)
Illumina Genome Analyzer IIx
(2)
Ion Chef
(2)
Ion Torrent S5 XL
(2)
NextSeq 550
(2)
Illumina HiSeq 3000
(2)
Applied BiosystemsTM GeneChipTM Whole Transcript (WT) PLUS Reagent Kit User Guide (Thermo Fisher Scientific, Waltham, MA, USA).
(1)
Applied BiosystemsTM GeneChipTM Clariom S human arrays
(1)
PAXgene Blood RNA Kit (PreAnalytiX, Hombrechtikon, Switzerland).
(1)
I.DOT (Dispendix), C.WASH (CYTENA), Qubit Fluorometer (Thermo Fisher Scientific), Agilent TapeStation 4200
(1)
BD FACSDiscover S8
(1)
10x Chromium v3
(1)
Agilent DNA Microarray Scanner Model #G2565BA
(1)
PCR machine; AMPure XP beads; TruSeq Stranded mRNA stranded prep. kit
(1)
PCR machine; Superscript II polymerase Kit (Invitrogen); PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep kit.; TruSeq Stranded mRNA stranded prep. kit
(1)
Centrifuge 5424R (Eppendorf); miRNeasy Mini Kit (Qiagen); TURBO^TM DNase (Ambion); Bioanalyser (Agilent)
(1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen); Cell culture dish (Nunc)
(1)
Centrifuge 5424R (Eppendorf); RNAprotect Bacteria Reagent (Qiagen)
(1)
PCR machine; MICROBExpress kit (Ambion); TruSeq Stranded mRNA stranded prep. kit
(1)
PCR machine; AMPure XP beads; TruSeq stranded mRNA sample prep. kit.
(1)
Affymetrix Gene Titan
(1)
Affymetrix GeneChip(R) HT Scanner
(1)
Gene Titan
(1)
G2505A DNA microarray scanner [Agilent]
(1)
Publication Date
2014
(78)
2010
(66)
2012
(59)
2013
(55)
2016
(52)
2025
(49)
2015
(47)
2008
(47)
2011
(45)
2023
(44)
2024
(43)
2020
(42)
2021
(33)
2022
(32)
2026
(31)
2018
(21)
2017
(20)
2009
(19)
2019
(16)
2005
(8)
2007
(8)
2006
(6)
2004
(1)
2003
(1)
UNIPROT ID/AC
P17858
(2)
P04075
(2)
P09467
(2)
P25208
(1)
P10244
(1)
P30307
(1)
P30279
(1)
Q08999
(1)
P23443
(1)
P42345
(1)
P42771
(1)
P11802
(1)
P06213
(1)
P46527
(1)
Q01094
(1)
P24941
(1)
Q13535
(1)
P14635
(1)
P06493
(1)
P38936
(1)
P31947
(1)
O14757
(1)
P30304
(1)
Q12834
(1)
P28028
(1)
Q8C180
(1)
P62716
(1)
P63331
(1)
Q8K4S7
(1)
D4A244
(1)
CHEBI ID
CHEBI:15996
(8)
CHEBI:17552
(8)
CHEBI:17154
(8)
CHEBI:15891
(8)
CHEBI:16737
(8)
CHEBI:16919
(8)
CHEBI:35280
(8)
CHEBI:6650
(6)
CHEBI:30769
(6)
CHEBI:17268
(6)
CHEBI:30915
(4)
CHEBI:18021
(4)
CHEBI:57579
(2)
CHEBI:30887
(2)
CHEBI:28602
(2)
CHEBI:16905
(2)
CHEBI:15946
(2)
CHEBI:53439
(1)
CHEBI:36080
(1)
CHEBI:35782
(1)
CHEBI:26034
(1)
CHEBI:16595
(1)
CHEBI:18035
(1)
CHEBI:18348
(1)
CHEBI:18361
(1)
CHEBI:29108
(1)
CHEBI:16618
(1)
CHEBI:16152
(1)
CHEBI:18367
(1)
CHEBI:16991
(1)
Metabolite Name
Nicotinamide
(7)
Methionine
(7)
Taurine
(7)
Proline
(7)
Creatinine
(7)
Creatine
(7)
Hypoxanthine
(7)
Butyryl-carnitine
(6)
Uracil
(6)
Kynurenine
(6)
Asparagine
(6)
Tyrosine
(6)
Adenosine
(6)
Threonine
(6)
Phenylalanine
(6)
Glutamine
(6)
Adenine
(6)
Cytidine
(6)
Guanosine
(6)
Uridine
(6)
Tryptophan
(6)
Inosine
(6)
Propionyl-carnitine
(5)
Valine
(5)
Betaine
(5)
Carnitine
(5)
Phosphocreatine
(5)
Methyl-histidine
(4)
Glutathione disulfide (GSSG)
(4)
Isovaleryl-carnitine
(4)
First Public Date
2024
(117)
2026
(115)
2023
(115)
2022
(98)
2025
(89)
2021
(87)
2020
(76)
2017
(70)
2019
(65)
2014
(37)
2018
(34)
2015
(30)
2016
(27)
2013
(22)
2012
(1)
Modelling Approach
Ordinary differential equation model
(16)
Constraint-based model
(2)
Lab affiliation
School of Medicine, College of Medicine, Fu Jen Catholic University, New Taipei, Taiwan
(5)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany
(4)
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan.
(4)
School of Medicine, Fu Jen Catholic University, New Taipei, Taiwan
(3)
BIOCEV, First Faculty of Medicine, Charles University, Czech Republic
(2)
Biochemistry, Schild-Poulter Lab, Robarts Research Institute, University of Western Ontario, Canada
(2)
Circadian Clock Project, Tokyo Metropolitan Institute of Medical Science, Kamikitazawa 2-1-6, Setagaya-ku, Tokyo, 156-8506, Japan.
(2)
Clinical and Diagnostic Immunology, Department Microbiology, Immunology and Transplantation, KU Leuven, Leuven, Belgium Laboratory Medicine, University Hospitals Leuven, Leuven, Belgium
(2)
Department of Biochemistry and Molecular Biology Graduate School and Faculty of Medicine, The University of Tokyo 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
(2)
Department of Microbiology and Immunology, Lab of Molecular Bacteriology, Rega Institute, KU Leuven
(2)
Helmholtz Institute for RNA-based Infection Research (HIRI), Helmholtz Centre for Infection Research (HZI), D-97080 Würzburg, Germany Institute of Molecular Infection Biology, University of Würzburg, D-97080 Würzburg, Germany
(2)
Institute of molecular and cellular biology
(2)
KU Leuven
(2)
KU Leuven - Department of Oncology - Laboratory for Disease Mechanisms in Cancer
(2)
MRC Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dundee, UK
(2)
VIB-KU Leuven Center for Cancer Biology
(2)
"Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany"
(1)
-Centre of Microbial and Plant Genetics; KU Leuven; Leuven, 3000; Belgium -Center for Microbiology; VIB-KU Leuven; Leuven, 3000; Belgium
(1)
-Translational Cardiomyology Laboratory, Stem Cell and Developmental Biology, Department of Development and Regeneration, KU Leuven, Leuven, Belgium -Histology and Medical Embryology Unit, Department of Anatomy, Histology, Forensic Medicine and Orthopaedics, Sapienza University of Rome, Rome, Italy
(1)
1 Centre of Microbial and Plant Genetics; KU Leuven; Leuven, 3000; Belgium 2 Center for Microbiology; VIB-KU Leuven; Leuven, 3000; Belgium
(1)
1.Department of Biochemistry, Faculty of Science, Kasetsart University, 50 Ngam Wong Wan Road, Chatuchak, Bangkok 10900, Thailand 2.Center for Advanced Studies in Nanotechnology for Chemical, Food and Agricultural Industries, KU Institute for Advanced Studies, Kasetsart University, Bangkok, 10900, Thailand
(1)
1Department of Chemistry, University of Texas at Austin, Austin, TX, 78712, USA
(1)
1Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan
(1)
1Department of Neuropathology, Medical Research Institute, Tokyo Medical and Dental University
(1)
1Institute of Plant Protection, Agricultural Research Organization, The Volcani Center, Rishon LeZion, Israel
(1)
Andreas Otto, Institute for Microbiology, Ernst-Moritz-Arndt-University of Greifswald, F.-L. Jahnstrasse 15, 17489 Greifswald, Germany
(1)
Associate Professor Stephen F. and Fay Evans Martin Endowed Professorship in Chemistry CPRIT Scholar Department of Chemistry University of Texas at Austin
(1)
BLc. PhD Ciencias Bioquímicas, UNAM Académico CONACYT División de Investigación Quirúrgica Centro de Investigación Biomédica de Occidente-IMSS Mexico
(1)
Barts Cancer Institute
(1)
CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chines Academy of Sciences, Beijing, China.
(1)
Tags
pathogen
(53)
pathogen:bacterium
(36)
pathogen:virus
(12)
xref:PubMed:38182825
(10)
xref:PubMed:37021585
(8)
xref:PubMed:23295674
(8)
xref:PubMed:33911273
(7)
xref:PubMed:32431014
(6)
xref:PubMed:36055191
(5)
xref:PubMed:36071145
(5)
xref:PubMed:36732635
(5)
xref:PubMed:34724962
(5)
xref:PubMed:36395225
(5)
xref:PubMed:42547805
(5)
xref:PubMed:40502204
(5)
pathogen:fungus
(5)
xref:PubMed:39743589
(4)
xref:PubMed:38539015
(4)
xref:PubMed:37133250
(4)
xref:PubMed:35697783
(4)
xref:PubMed:40065102
(4)
xref:PubMed:31186416
(4)
xref:PubMed:28135362
(4)
xref:PubMed:36423635
(3)
xref:PubMed:30657881
(3)
xref:PubMed:37748190
(3)
xref:PubMed:41124261
(3)
xref:PubMed:38182597
(3)
xref:PubMed:36719227
(3)
xref:PubMed:38037844
(3)
IsPrivate
False
(19)
Model Flag
Non Miriam
(1)
Non Kinetic
(1)
Submitter Keywords
Immuno-oncology
(1)
Classification
bacteria
(36)
viruses
(12)
fungi
(5)
Modification
4x(15)N labeled L-arginine
(3)
2x(15)N labeled L-lysine
(2)
3x(2)H labeled N6-acetyl-L-lysine
(1)
Study type
Transcription profiling by array
(257)
RNA-seq of coding RNA
(63)
Comparative genomic hybridization by array
(34)
RNA-seq of non coding RNA
(34)
ChIP-seq
(31)
ChIP-chip by tiling array
(22)
RNA-seq of coding RNA from single cells
(15)
Unknown experiment type
(13)
Other
(12)
Transcription profiling by tiling array
(7)
Genotyping by array
(6)
Cell line - High-throughput sequencing
(4)
Methylation profiling by high throughput sequencing
(4)
DNA-seq
(3)
RNA-seq of total RNA
(3)
Proteomic profiling by array
(2)
Transcription profiling by SAGE
(1)
Baseline
(1)
Differential
(1)
Human - Single-cell sequencing
(1)
Plant - High-throughput sequencing
(1)
Cell line - One-color microarray
(1)
ChIP-chip by array
(1)
Spatial transcriptomics by high-throughput sequencing
(1)
4C
(1)
MicroRNA profiling by array
(1)
Methylation profiling by array
(1)
Genotyping by high throughput sequencing
(1)
Release Date
2022
(5295)
2021
(4844)
2025
(4674)
2023
(4623)
2024
(3949)
2020
(3863)
2019
(3104)
2018
(2809)
2017
(2533)
2016
(2282)
2015
(1935)
2014
(1624)
2013
(1055)
2012
(917)
2011
(714)
2026
(681)
2010
(681)
2009
(592)
2008
(493)
2007
(337)
2006
(309)
2005
(275)
2004
(188)
2003
(145)
2002
(138)
2001
(121)
2000
(107)
1999
(85)
1998
(53)
1997
(26)
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Thermotoga sp. Ku-13t
Thermotoga sp. Ku-13t Genome sequencing and assembly
PRJNA302195
|
ENA
Cite
Citrobacter sp. ku-bf4
Citrobacter sp. ku-bf4 Genome sequencing and assembly
PRJNA704500
|
ENA
Cite
Aspergillus niger strain:Ku
Aspergillus niger Ku Gene Expression Profiling - Ku_2
PRJNA408337
|
ENA
Cite
Aspergillus niger strain:Ku
Aspergillus niger Ku Gene Expression Profiling - Ku_1
PRJNA408336
|
ENA
Cite
Aspergillus niger strain:Ku
Aspergillus niger Ku Gene Expression Profiling - Ku_3
PRJNA408338
|
ENA
Cite
Paraburkholderia terrae strain:KU-15
Burkholderia terrae KU-15
PRJDB10639
|
ENA
Cite
Chelatococcus sp. strain:KU-N122
Chelatococcus sp. KU-N122
PRJDB16010
|
ENA
Cite
Paraburkholderia terrae strain:KU-64
Paraburkholderia terrae KU-64
PRJDB11943
|
ENA
Cite
Pseudomonas bubulae strain:KU 04
Pseudomonas bubulae strain:KU 04 Genome sequencing and assembly
PRJNA785367
|
ENA
Cite
Paraburkholderia terrae strain:KU-46
Paraburkholderia terrae KU-46
PRJDB17035
|
ENA
Cite
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