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ProteomicsCompetition between microbes during anaerobic oxidation of methane: Bioreactor metaproteomics
In this study, we investigated Mn3+-cycling microbial populations enriched from Lake Matano, Indonesia using metagenomics and metaproteomics. Lake Matano contains an active Mn cycle that links the oxic-anoxic interface with anoxic deep waters that are enriched in iron and manganese, and depleted in ...
ORGANISM(S): sediment metagenome 
2020-06-30 | PXD011642 | Pride
Dechloromonas Bioreactor Lake sediment 
ProteomicsLake sediment samples LCMS data analysis
Lake sediment samples for biosurfactants analysis
ORGANISM(S): Lake Sediments Samples 
2023-07-02 | MSV000092330 | MassIVE
ProteomicsMicrobial consortia mediating lignocellulose turnover and denitrification in eutrophic lake sediment enrichments
Anthropogenic activities such as urbanization and agriculture can potentially pose a threat to neighboring freshwaters through nitrate and phosphorous contamination, which over time may lead to lake eutrophication. In such nitrogen-polluted environments, oxygen is depleted, and plants die and decomp...
ORGANISM(S): Bacteria 
2026-04-30 | PXD069160 | Pride
Metaproteomics 
ProteomicsLake sediment samples LCMS data analysis
Metabolomic analysis of sediment samples specially for glycolipid analysis
ORGANISM(S): Lake Sediment Samples 
2023-07-04 | MSV000092341 | MassIVE
TranscriptomicsHigh-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment
Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc ...
ORGANISM(S): unidentified 
2012-11-11 | E-GEOD-25345 | biostudies-arrayexpress
GenomicsLake sediment
Lake sediment Eukaryotic community
PRJNA1079649 | ENA
TranscriptomicsA transcriptomics approach to compare transcriptomes of individual methylotrophs from Lake Washington sediment in artificial communities and in pure cultures.
We established simple synthetic microbial communities in a microcosm model system to determine the mechanisms that underlay cross-feeding in microbial methane-consuming communities. Co-occurring strains from Lake Washington sediment were used that are involved in methane consumption, a methanotroph ...
ORGANISM(S): Methylotenera mobilis Methylobacter tundripaludum 
2016-12-26 | GSE85736 | GEO
MetabolomicsGNPS - Lake sediment samples LCMS data analysis
Lake sediment samples for biosurfactants analysis
ORGANISM(S): Lake Sediments Samples 
2023-07-02 | MSV000092330 | GNPS
Genomicslake sediment metagenome
lake sediment metagenome Raw sequence reads
PRJNA859994 | ENA
UnknownThe Distribution Pattern of Sediment Archaea Community of the Poyang Lake, the Largest Freshwater Lake in China.
Not available
S-EPMC5187460 | biostudies-literature
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