Lakshmi V V - OmicsDI

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Unknown (158)
Proteomics (19)
Transcriptomics (12)
Genomics (12)
Multiomics (1)
Metabolomics (1)

Organisms

Homo sapiens (18)
Macaca nemestrina (2)
Mus musculus (2)
Streptococcus oralis SK255 (1)
Yersinia pseudotuberculosis (1)
Bos taurus (1)
Drosophila melanogaster (1)

Repository

PAXDB (15)
biostudies-arrayexpress (12)
EGA (12)
MassIVE (2)
pride (2)
MetaboLights (1)

Tissue

Brain (1)
Cervical mucus (1)

Disease

Premature birth (1)

Technology Type

Mass Spectrometry (2)
Shotgun proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Mass spectrometry (1)

Instrument Platform

LTQ Orbitrap (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2014 (17)
2012 (3)
2010 (3)
2011 (2)
2015 (1)
2013 (1)
2024 (1)
2016 (1)
2022 (1)
2018 (1)
2017 (1)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
7955.ENSDARP00000104379 (15)
7955.ENSDARP00000104630 (15)

CHEBI ID

CHEBI:10136 (1)
CHEBI:104017 (1)
CHEBI:125536 (1)
CHEBI:131608 (1)
CHEBI:131665 (1)
CHEBI:131690 (1)
CHEBI:131692 (1)
CHEBI:131743 (1)
CHEBI:132448 (1)
CHEBI:133094 (1)
CHEBI:133221 (1)
CHEBI:133530 (1)
CHEBI:133626 (1)
CHEBI:133834 (1)
CHEBI:134254 (1)
CHEBI:134287 (1)
CHEBI:134442 (1)
CHEBI:134444 (1)
CHEBI:135349 (1)
CHEBI:135758 (1)
CHEBI:136542 (1)
CHEBI:136851 (1)
CHEBI:137056 (1)
CHEBI:137227 (1)
CHEBI:137228 (1)
CHEBI:138089 (1)
CHEBI:138421 (1)
CHEBI:138517 (1)
CHEBI:138522 (1)
CHEBI:138531 (1)

Metabolite Name

(-)-Epigallocatechin 3-gallate 7-glucoside 4-glucuronide" (1)
(1(10)E,4a,5E)-1(10),5-Germacradiene-12-acetoxy-4,11-diol (1)
(10beta-aH,11xi)-11-Hydroxy-13-nor-6-eremophilen-8-one (1)
(1R,16Z,24E,26E,28Z)-1,18-dihydroxy-12-[1-(4-hydroxy-3-methoxycyclohexyl)propan-2-yl]-19,30-dimethoxy-15,17,21,23,29-pentamethyl-35-methylidene-11,36-diox4-azatricyclo[30.3.1.0,]hexatriacont16,24,26,28-tetraene-2,3,10,14,20-pentone (1)
(24E)-3alpha-a,15alpha-Diacetoxy-23-oxo-7,9(11),24-lanostatrien-26-oic acid (1)
(2E)-Pentadecenoyl-CoA (1)
(2E,8Z)-Decadiene-4,6-diyn-1-yl 3-methylbutanoate (1)
(2RS,5RS)-(E)-2-(2-Phenylethenyl)-1,3-dioxan-5-ol (1)
(2S,6R,10R)-Trimethyl-hendecanoyl-CoA (1)
(3a,5b,7a)-23-Carboxy-7-hydroxy-24-norcholan-3-yl-b-D-Glucopyranosiduronic acid (1)
(3b,16a,20R)-25-Acetoxy-3,16,20,22-tetrahydroxy-5-cucurbiten-11-one 3-glucoside (1)
(3b,24R,25x)-26-Benzoyloxystigmast-5-ene-3-ol (1)
(3b,9R)-5-Megastigmene-3,9-diol 9-[apiosyl-(1->6)-glucoside] (1)
(5-ethenyl-2-hydroxyphenyl)oxidanesulfonic acid (1)
(6E,8E,10R,12Z)-10-Hydroxy-3-oxooctadecatrienoic acid (1)
(S)-Annocherine A (1)
(S)-Edulinine (1)
(S)-Nerolidol 3-O-[L-Rhamnopyranosyl-(1->4)-L-rhamnopyranosyl-(1->2)-[L-rhamnopyranosyl-(1->6)]-b-D-glucopyranoside] (1)
(Z)-9-Cycloheptadecen-1-one (1)
(all-E)-6'-Apo-y-caroten-6'-al (1)
({6-[5,7-dihydroxy-4-oxo-8-(3,4,5-trihydroxyoxan-2-yl)-2-(2,4,5-trihydroxyphenyl)-4H-chromen-6-yl]-3,4,5-trihydroxyoxan-2-yl}methoxy)sulfonic acid (1)
1,1'-(Tetrahydro-6hydroxy-2,3a,5-trimethylfuro[2,3-d]-1,3-dioxole-2,5-diyl)bis-ethanone (1)
1,2-Dihydro-1,1,6-trimethylnaphthalene (1)
1-(1-Methylethenyl)-4-(1-methylethyl)benzene (1)
1-(5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl)-glycero-3-phosphate (1)
1-(8Z,11Z,14Z-eicosatrienoyl)-glycero-3-phosphate (1)
1-Acetoxy-2-hydroxy-16-heptadecyn-4-one (1)
1-Methyl-4-nitroimidazole (1)
1-Phenyl-2-hexanone (1)
1-Stearoylglycerophosphocholine (1)

Study type

Transcription profiling by array (9)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2024 (20)
2022 (18)
2025 (17)
2021 (17)
2023 (16)
2014 (10)
2018 (10)
2013 (9)
2020 (9)
2015 (7)
2012 (7)
2019 (5)
2011 (4)
2026 (4)
2017 (4)
2010 (3)
2016 (3)
2009 (3)
2007 (2)
2006 (1)

Lab affiliation

Associate Professor, Pediatrics Adjunct Associate Professor, Microbiology and Global Health Affiliate Member: FHCRC Consortium University of Washington Seattle Childrens Research Institute 1900 9th Ave SeattleWA 98101-1304 (1)
Centre for Cellular and Molecular Biology (1)

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Targeting Androgen Receptor and DNA Repair in Metastatic Castration-Resistant Prostate Cancer: Results From NCI 9012.

Not available

S-EPMC6075827 | biostudies-literature

Human mitochondria hub of small RNAs: Analysis by deep Sequencing

We report here that human mitochondria contain small RNA including microRNA, piRNA, tRNA, rRNA, and RNA repeats. Mitochondria from human cells were purified and RNA isolated. Small RNAs were purified, library generated and analyzed by Illumina Hiseq 2000 system. The sequencing generated 19.5 and 17....

ORGANISM(S): Homo sapiens

2013-03-05 | E-GEOD-32185 | biostudies-arrayexpress

A new syndrome with overlapping features of Townes-brocks syndrome and single median maxillary central incisor syndrome.

Not available

S-EPMC3656532 | biostudies-literature

Study of the functional implication of altered nuclear morphology on global gene expression profile in Drosophila S2R+ cells

A probe of the coupling of gene expression and nuclear structure in Drosophila S2R+ cells was undertaken by a study of altered expression profile following a 6 day RNAi mediated genetic perturbation of Klaroid (CG18584), Lamin (CG6944) and Msp-300 (CG33715). Genotypic Technology designed Custom Ge...

ORGANISM(S): Drosophila melanogaster

2012-10-01 | E-GEOD-32525 | biostudies-arrayexpress

A global 400-m high-resolution soil moisture dataset derived from multi-sensor remote sensing observations.

Not available

S-EPMC12820223 | biostudies-literature

Comparative metagenomic analysis of rice soil samples revealed the diverse microbial population and biocontrol organisms against plant pathogenic fungus Magnaporthe oryzae.

Not available

S-EPMC8085183 | biostudies-literature

Hyperhomocysteinemia-related serum metabolome alterations not normalized by short-term folic acid treatment

Introduction

Hyperhomocysteinemia (HHCys) is an independent risk factor for various diseases such as cardiovascular diseases, Alzheimer's, and cancers. Folate deficiency is one of the significant reasons for HHCys. However, it is not known whether folate deficiency with HHCys is associated w...

2022-02-07 | MTBLS2150 | MetaboLights

Biogenic synthesis of silver nanoparticle by Cytobacillus firmus isolated from the river sediment with potential antimicrobial properties against Edwardsiella tarda.

Not available

S-EPMC11392742 | biostudies-literature

Comparison between the geological features of Venus and Earth based on gravity aspects.

Not available

S-EPMC10382528 | biostudies-literature

Highly efficient catalyst-free domino conjugate addition, decarboxylation and esterification/amidation of coumarin carboxylic acid/esters with pyrazolones: a green chemistry approach.

Not available

S-EPMC9051535 | biostudies-literature