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GenomicsSigma38 binding sites in E. Coli
ChIP-seq to identify sigma38 binding sites in wild-type and delta ssrS (6S RNA knockout) strains of E. Coli K-12 MG1655, during stationary phase ChIP-seq using antibody against sigma38 in wild-type and ssrS deletion strain. Two replicates for wild type and one replicate for ssrS deletion.
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2016-06-10 | E-GEOD-74836 | biostudies-arrayexpress
TranscriptomicsGrowth-phase dependent regulation of transcription by Rsd and 6S RNA
This entry refers to transcriptome analysis of five E. coli strains: E. coli K-12 MG1655, single deletions of rsd, ssrS, and rpoS, as well as a double deletion of rsd and ssrS, in five growth phases. 25 samples (5 strains in 5 growth phases) with 2 replicates each.
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2016-06-10 | E-GEOD-74809 | biostudies-arrayexpress
TranscriptomicsPsoralen binding across the Escherichia coli chromosome
We used trimethylpsoralen intercalation to map supercoiling across the E. coli chromosome. We treated E. coli cells with trimethylpsoralen and exposed them to UV light. Psoralen enters cells, intercalates between DNA base pairs, and crosslinks the two strands of DNA at a rate proportional to the loc...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2016-03-22 | E-GEOD-77687 | biostudies-arrayexpress
TranscriptomicsE. coli transcriptome in stationary and mid-exponential phase
E. coli RNA was hybridized to tiling arrays to study the pattern of gene expression across the chromosome. 1 sample for stationary phase and 1 for mid-exponential phase
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2016-03-22 | E-GEOD-77686 | biostudies-arrayexpress
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