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TranscriptomicsTranscription profiling of mouse fibroblast cells transfected with zinc-inducible C/EBP expression vectors identifies Per2 as a gene implicated in myeloid leukemia
The zinc-inducible C/EBP expression vectors pMTa, pMTb, pMTd and pMTe were constructed by cloning the human C/EBPa, C/EBPb, C/EBPd and C/EBPe cDNAs, respectively, into the pMTCB6+ vector. NIH 3T3 cells were transfected with zinc-inducible C/EBP vectors as well as control empty vector using the GeneP...
ORGANISM(S): Mus musculus 
2007-12-04 | E-GEOD-2188 | biostudies-arrayexpress
TranscriptomicsIntegration of Hi-C and ChIP-seq data reveals distinct types of chromatin hubs
We have analyzed publicly available K562 Hi-C data, which enables genome-wide unbiased capturing of chromatin interactions, using a Mixture Poisson Regression Model to define a highly specific set of interacting genomic regions. We integrated multiple ENCODE Consortium resources with the Hi-C data, ...
ORGANISM(S): Homo sapiens 
2012-06-30 | E-GEOD-32213 | biostudies-arrayexpress
ModelsShin_2018_EGFR-PYK2-c-Met interaction network_model
Systems modelling of the EGFR-PYK2-c-Met interaction network predicted and prioritized synergistic drug combinations for Triple-negative breast cancer
2024-09-02 | BIOMD0000000826 | BioModels
TranscriptomicsHost and pathogen interaction: time course [C. albicans]
The interaction between fungal pathogen and host during infection is a complex and dynamic process. To resolve this, we chose the zebrafish model organism as the host to study C. albicans infection via systems biology approach. Transcriptome microarray data and histological analysis of surviving fis...
ORGANISM(S): Candida albicans 
2013-08-26 | E-GEOD-32117 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of mouse osteoclastogenic splenocytes
Effect of c-fos expression in osteoclastogenic splenocytes.
ORGANISM(S): Mus musculus 
2008-06-15 | E-GEOD-676 | biostudies-arrayexpress
TranscriptomicsHybridPoplar_H11-11_Leaves_MalacosomaDisstria_Herbivory
From a set of 15 standard, normalized or full-length cDNA libraries, we generated 139 007 3'- or 5'-end sequenced ESTs, representing more than one-third of the c. 385 000 publicly available Populus ESTs. Clustering and assembly of 107 519 3'-end ESTs resulted in 14 451 contigs and 20 560 singletons,...
ORGANISM(S): Populus trichocarpa x Populus deltoides 
2008-04-22 | E-GEOD-9522 | biostudies-arrayexpress
Genomics
IDENTIFICATION OF MUTATIONS IN POLISH LAN-NEGATIVE INDIVIDUALS AND THEIR RELATIVES
PRJEB23454 | ENA
UnknownLanatoside C decelerates proliferation and induces apoptosis through inhibition of STAT3 and ROS-mediated mitochondrial membrane potential transformation in cholangiocarcinoma.
Not available
S-EPMC10308052 | biostudies-literature
UnknownEffectiveness of oregano essential oil vapor on shelf life extension of kai lan (Brassica oleracea var. alboglabra).
Not available
S-EPMC11743022 | biostudies-literature
GenomicsChrom-Lasso：A lasso regression-based model to detect functional chromatin interactions using Hi-C data
Chrom-Lasso：A lasso regression-based model to detect functional chromatin interactions using Hi-C data
PRJNA665037 | ENA
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