Lan R R - OmicsDI

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Unknown (2545)
Transcriptomics (280)
Proteomics (69)
Genomics (23)
Metabolomics (22)
Models (1)
Genomic (1)

Organisms

Homo sapiens (169)
Mus musculus (64)
Arabidopsis thaliana (12)
Saccharomyces cerevisiae (9)
Rattus norvegicus (9)
Escherichia coli (5)
Staphylococcus aureus (5)
Candida albicans (5)
Caldicellulosiruptor saccharolyticus (3)
Thermus thermophilus HB8 (3)
Drosophila melanogaster (3)
Vitis vinifera (3)
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Leishmania donovani (2)
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Aedes aegypti (2)
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Bos taurus (2)
Plasmodium falciparum (2)
Canis lupus familiaris (2)
Caldicellulosiruptor kronotskyensis (1)
Agrobacterium tumefaciens (1)
Bifidobacterium animalis subsp. lactis (1)
Cimex lectularius (1)
human oral metagenome (1)
Olea europaea (1)
Brevibacterium aurantiacum (1)
Macroptilium atropurpureum (1)
Roseburia inulinivorans DSM 16841 (1)

Repository

biostudies-arrayexpress (298)
pride (33)
MassIVE (21)
MetaboLights (21)
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Technology Type

Mass Spectrometry (33)
Shotgun proteomics (17)
Mass spectrometry (16)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
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Instrument Platform

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Q Exactive (7)
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Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (3)
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Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2013 (47)
2010 (41)
2012 (38)
2014 (31)
2008 (27)
2015 (25)
2011 (24)
2009 (21)
2016 (18)
2022 (17)
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2020 (9)
2017 (8)
2018 (7)
2007 (6)
2019 (3)
2006 (3)
2005 (2)

CHEBI ID

CHEBI:16704 (7)
CHEBI:17203 (7)
CHEBI:17533 (7)
CHEBI:16027 (6)
CHEBI:16196 (6)
CHEBI:17053 (6)
CHEBI:17154 (6)
CHEBI:18132 (6)
CHEBI:30769 (6)
CHEBI:41865 (6)
CHEBI:15603 (5)
CHEBI:15891 (5)
CHEBI:16015 (5)
CHEBI:16020 (5)
CHEBI:16040 (5)
CHEBI:16259 (5)
CHEBI:16335 (5)
CHEBI:16450 (5)
CHEBI:16467 (5)
CHEBI:17191 (5)
CHEBI:17295 (5)
CHEBI:17361 (5)
CHEBI:17509 (5)
CHEBI:17748 (5)
CHEBI:17895 (5)
CHEBI:18019 (5)
CHEBI:18050 (5)
CHEBI:22652 (5)
CHEBI:27823 (5)
CHEBI:48131 (5)

Metabolite Name

L-Phenylalanine (8)
Azelaic acid (5)
Inosine (5)
L-Isoleucine (5)
L-Tryptophan (5)
Oleic acid (5)
Pyridoxal (5)
Tetrahydrocorticosterone (5)
Citrate (4)
Cortisol (4)
Cytosine (4)
Deoxyuridine (4)
Dodecanedioic acid (4)
Glycerol 3-phosphate (4)
L-Glutamate (4)
L-Proline (4)
L-Valine (4)
N-Acetyl-L-phenylalanine (4)
Streptomycin (4)
Sucrose (4)
Tetradecanedioic acid (4)
Thymidine (4)
Thymine (4)
1,2,10-Trihydroxydihydro-trans-linalyl oxide 7-O-beta-D-glucopyranoside (3)
2-Hydroxycinnamic acid (3)
2-Phenylacetamide (3)
21-Deoxycortisol (3)
3-Phosphoserine (3)
4-Hydroxybenzaldehyde (3)
4-formyl Indole (3)

IsPrivate

False (1)

Model Flag

Non Kinetic (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (213)
RNA-seq of coding RNA (37)
ChIP-seq (13)
Comparative genomic hybridization by array (8)
Unknown experiment type (7)
Methylation profiling by array (4)
Methylation profiling by high throughput sequencing (4)
RNA-seq of non coding RNA (4)
ChIP-chip by tiling array (3)
Other (2)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)

Release Date

2025 (381)
2022 (323)
2024 (303)
2023 (290)
2021 (234)
2020 (201)
2019 (170)
2018 (125)
2017 (107)
2016 (102)
2015 (95)
2014 (87)
2013 (76)
2026 (73)
2012 (62)
2010 (58)
2011 (48)
2009 (35)
2008 (35)
2007 (10)
2006 (6)
2004 (6)
2005 (5)
2001 (4)
2000 (2)
1998 (2)
2003 (1)
2002 (1)
1999 (1)

Lab affiliation

Shandong Normal University, Jinan 250014, P. R. China. (3)
College of Life Science, Northwest University (2)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (2)
Biochemistry and Structural Biology Greehey Children's Cancer Research Institute University of Texas Health at San Antonio United States (1)
College of Life Sciences, Northwest University, Xi’an 710069, China (1)
College of Life and Health Sciences, Northeastern University, Shenyang, China. (1)
Department of Developmental and Cell Biology, University of California, Irvine, Irvine, CA 92697, USA (1)
Department of Human Genetics, Radboud University Medical Center Nijmegen (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Hong Kong University of Science and Technology (1)
IRIC-Université de Montréal (1)
Institue of Molecular Systems Biology ETH Zurich, Switzerland (1)
Institute of Molecular Systems Biology, ETH Zurich (1)
Institute of Soil Science (1)
Justus Liebig University Giessen Department of Anatomy and Cell Biology Aulweg 123 35392 Giessen (1)
Key Laboratory of Animal Production, Product Quality and Security, Ministry of Education, Key Laboratory of Animal Nutrition and Feed Science, Jilin Province, College of Animal Science and Technology, Jilin Agricultural University, Changchun, P. R. China 130118 (1)
Northwest University (1)
RC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Headington, Oxford OX3 9DS 2Edinburgh Cancer Research, CRUK Scotland Centre, Institute of Genetics and Cancer, University of Edinburgh, Crewe Road South, EH4 2XU, Edinburgh, UK (1)
Raymond H. Wittcoff Distinguished Professor and Head Department of Biochemistry and Molecular Biophysics Washington University School of Medicine St. Louis, MO 63110 United States of America (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia (1)
School of Clinical Medicine, Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. Ningxia Human Stem Cell Institute, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. (1)
Shanghai institute of materia medica (1)
Shenzhen University (1)
Sir William Dunn School of Pathology, University of Oxford, South Parks Road, Oxford OX1 3RE, UK (1)
Southern University of Science and Technology (1)
University Medical Center Goettingen, Institute of Clinical Chemistry, Core Facility Proteomics (1)
Xuanwu Hospital, Capital Medical University (1)
huazhong agriculture university (1)

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(R)-2-[(R)-2,2-Dimethyl-1,3-dioxolan-4-yl]-1,3-oxathio-lan-5-one.

Not available

S-EPMC2969249 | biostudies-literature

The initiation, propagation and dynamics of CRISPR-SpyCas9 R-loop complex.

Not available

S-EPMC5758904 | biostudies-literature

Research on government subsidy strategies for new drug R&D considering spillover effects.

Not available

S-EPMC8830673 | biostudies-literature

An R-loop-initiated CSB-RAD52-POLD3 pathway suppresses ROS-induced telomeric DNA breaks.

Not available

S-EPMC7026659 | biostudies-literature

Aromatic compounds from an aqueous extract of "ban lan gen" and their antiviral activities.

Not available

S-EPMC5343108 | biostudies-literature

Binding of FANCI-FANCD2 Complex to RNA and R-Loops Stimulates Robust FANCD2 Monoubiquitination.

Not available

S-EPMC6350941 | biostudies-literature

Gut microbial release of ferulic acid from germinated quinoa alleviates obesity-associated cognitive impairment via activation of PINK1/Parkin-mediated mitophagy in the hippocampus

Background Obesity is a major risk factor for cognitive impairment and related neurodegenerative disorders. Whole grains are rich in polyphenols and dietary fiber, and their consumption has been associated with improvements in obesity and cognitive deficits. Gut microbial genes encode enzymes tha...

2026-03-30 | MTBLS14185 | MetaboLights

The RNA m5C modification in R-loops as an off switch of Alt-NHEJ.

Not available

S-EPMC10542358 | biostudies-literature

Differential gene expression in Roseburia inulinivorans grown on inulin and starch

Roseburia inulinivorans is a recently identified motile representative of the Firmicutes that contributes to butyrate formation from a variety of dietary polysaccharide substrates in the human large intestine. Microarray analysis was used here to investigate substrate-driven gene expression changes ...

ORGANISM(S): Roseburia inulinivorans DSM 16841

2010-07-24 | E-GEOD-22245 | biostudies-arrayexpress

mRNA-Seq and microRNA-Seq whole-transcriptome analysis of rhesus monkey ESC neural differentiation revealed the potential rosette neural stem cell regulators

Rosette neural stem cells (R-NSCs) represent early stage of neural development and possess full neural differentiation and regionalization capacities. R-NSCs are considered as stem cells of neural lineage and have important implications in study of neurogenesis and cell replacement therapy. However,...

ORGANISM(S): Macaca mulatta

2014-07-03 | E-GEOD-53260 | biostudies-arrayexpress

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